New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4109618	25 (0.570)	3 (0.070)	3/326	NT	11.2%	coding (1440/2991 nt)	PP_3616	conserved membrane protein of unknown function
	?	AE015451	= 4109662	NA (NA)					coding (1484/2991 nt)	PP_3616	conserved membrane protein of unknown function

GAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGA  >  AE015451/4109397‑4109850                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         gAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTc                                                                                                                                                                                                                              >  2:506864/1‑234 (MQ=31)                                                                gaACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGc                                                                                                                                                             >  1:372241/1‑236 (MQ=31)                                                                gaACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGc                                                                                                                                                             >  1:43289/1‑236 (MQ=31)                                                                              ccgcGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCgg                                                                                                                                               >  1:347063/1‑236 (MQ=31)                                                                                  ggTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGGCAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCa                                                                                                                                            <  1:381607/235‑1 (MQ=14)                                                                                  ggTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCa                                                                                                                                            <  1:773080/235‑1 (MQ=31)                                                                                   gTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTc                                                                                                                                                   >  1:723781/1‑227 (MQ=31)                                                                                                 cTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCAcc                                                                                                                              >  1:668666/1‑234 (MQ=32)                                                                                                 cTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCCGCGCCAGCGACCACGTGATCGAAGGGCTGGCCGGTCGCtc                                                                                                                                                    >  1:203751/1‑211 (MQ=14)                                                                                                  tGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGa                                                                                                                            <  1:154813/235‑1 (MQ=32)                                                                                                           tGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCAcc                                                                                                                     <  2:688919/233‑1 (MQ=33)                                                                                                            gATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCg                                                                                                                    >  2:353234/1‑233 (MQ=32)                                                                                                             aTTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCa                                                                                                                <  1:217250/236‑1 (MQ=32)                                                                                                                         ggCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATg                                                                                                     <  1:466414/235‑1 (MQ=33)                                                                                                                                  acacCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCGCTACAACGCCTTGGCGCCGaccaagg                                                                                                                                                                                                                                   >  1:490635‑M1/1‑93 (MQ=255)                                                                                                                                                  aTCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCgg                                                                            <  1:395267/235‑1 (MQ=35)                                                                                                                                                       gACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGcc                                                                                                   >  1:292611/1‑207 (MQ=35)                                                                                                                                                            gCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGaacaaggtgccgatcgaatcg                                                                                                                                                                                                                     >  1:467093‑M1/1‑67 (MQ=255)                                                                                                                                                            gCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGaacaaggtgccgatcgaatcg                                                                                                                                                                                                                     <  2:467091‑M1/88‑22 (MQ=255)                                                                                                                                                               tttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTg                                                                                 >  1:386445/1‑217 (MQ=37)                                                                                                                                                                ttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGt                                                                                                                                                         >  1:85568/1‑144 (MQ=32)                                                                                                                                                                ttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGt                                                                                                                                                         <  2:85567/144‑1 (MQ=32)                                                                                                                                                                ttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGa                                                             <  1:353236/236‑1 (MQ=37)                                                                                                                                                                            gAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCa                                                                                                                       <  2:400403/166‑1 (MQ=35)                                                                                                                                                                                                 gACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCgg                                                                            <  2:43289/188‑1 (MQ=37)                                                                                                                                                                                                      cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATggg                                                              >  2:749659/1‑197 (MQ=37)                                                                                                                                                                                                      cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCa                        >  1:560153/1‑235 (MQ=39)                                                                                                                                                                                                         gCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGGGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGAc                                      >  1:938/1‑218 (MQ=39)                                                                                                                                                                                                                           gcCGaacaaggtgccgatcgaatcggctttgtccttgaacgggttgaacggcgccaaggcggtgtaaagcgggctgtcgtgctggtccagccattgctccaggcgtttgaaacgccggtcatgatcttctgtgccgggtgtcggctggcccattgggtgaatcagcaacgccagtgagatttccagaccgcgggcggaggtgcgttcgtcgcggtcgtaacaggccagtgccgcag  <  1:277405‑M1/236‑233 (MQ=255)                                                                                                                                                                                                                            ccGaacaaggtgccgatcgaatcggctttgtccttgaacgggttgaacggcgccaaggcggtgtaaagcgggctgtcgtgctggtccagccattgctccaggcgtttgaaacgccggtcatgatcttctgtgccgggtgtcggctggcccattgggtgaatcagcaacgccagtgagatttccagaccgcgggcggaggtgcgttcgtcgcggtcgtaacaggccagtgccgcag  <  1:709663‑M1/235‑233 (MQ=255)                                                                                                                                                                                                                            ccGaacaaggtgccgatcgaatcggctttgtccttgaacgggtggaacggcgccaaggcggtgtaaagcgggctgtcgtgctggtccagccattgctccaggcgtttgaaacgccggtcatgatcttctgtgccgggtgtcggctggcccattgggtgaatcagcaacgccagtgagatttccagaccgcgggcggaggtgcgttcgtcgcggtcgtaacaggccagtgccgcag  <  1:112094‑M1/235‑233 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         GAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGA  >  AE015451/4109397‑4109850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.