New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4634373 =	37 (0.850)	6 (0.150)	4/324	NT	14.5%	coding (738/1824 nt)	uvrC	UvrABC system protein C
	?	AE015451	4634457 =	36 (0.870)					coding (654/1824 nt)	uvrC	UvrABC system protein C

CGACCTGGTGACTGCCGAGGAATACGCAGAGGACGTTCGTCATTCGGTGATGTTTCTGGAAGGGCGTAGCCAGCAACTGGGCAATGAGTTGAACGCCGAGATGGAAAAGGCCGCCATGGCCCTCGATTTCGAAAAAGCCGCCGAGCTGCGCGACCAGATCGCCTTGTTGCGCCGCGTGCAGGACCAACAGTACATCGAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4634574‑4634373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgagggcCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCAGGTCGGTGCAGGGCCCTTTGCAGCGTTTTATCTGGTACTGCAGGCATGGCCGGGTGCGGTTGGCGTAGTAGCTGTCTTCGCACTGACGCACAGAAAAAGCCTTTTGCAGCAGGCTG  >  AE015451/4634457‑4634685                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGACCTGGTGACTGCCGAGGAATACGCAGAGGACGTTCGTCATTCGGTGATGTTTCTGGAAGGGCGTAGCCAGCAACTGGGCAATGAGTTGAACGCCGAGATGGAAAAGGCCGCCATGGCCCTCGATTTCGAAAAAGCCGCCGAGCTGCGCGACCAGATCGCCTTGTTGCGCCGCGTGCAGGACCAACAGTACATCGA                                                                                                                                                                                                                                           >  2:22580/1‑198                                                                            ACTGGGCAATGAGGTGAACGCCGAGAGGGAAAAGGCCGCCATGGCCCTCGATTTCGAAAAAGCCGCCGAGCTGCGCGACCAGATCGCCTTGTTGCGCCGCGTGCAGGACCAACAGTACATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCT                                                                                                                                            <  1:256013/218‑1                                                                                                           AAGGCCGCCATGGCCCTCGATTTCGAAAAAGCCGCCGAGCTGCGCGACCAGATCGCCTTGTTGCGCCGCGTGCAGGACCAACAGTACATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGG                                                                                                                                                                                      <  1:714760/145‑1                                                                                                                                                                                  GCAGGACCAACAGTACATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCCGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGACACCAGGTCGGTGCAGGGCCCTTTGCt                                                                                                >  2:71844/1‑159                                                                                                                                                                                  GCAGGACCAACAGTACATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCAGGTCGGTGCAGGGCCCTTTGCAGCGCTTTATC                                                                                      >  2:352433/1‑170                                                                                                                                                                                  GCAGGACCAACAGTACATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCA                                                                                                                      <  1:802598/138‑1                                                                                                                                                                                  GCAGGACCAACAGTACATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCA                                                                                                                      >  2:802596/1‑138                                                                                                                                                                                                 cagcgcGGGCCATGCCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCAGGTCGGTGCAGGGCCCTTTGCAGCGTTTTATCTGGTACTGCAGGCATGGCCGGGTGCGGT                                                          <  2:654697/177‑1                                                                                                                                                                                                     GAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCAGGTCGGTGCAGGGCCCTTTGCAGCGTTTTATCTGGTATTGCAGGCATGGCCGGGTGCGGTTGGCGTAGTAGCTGTCTTCGCACTGACGCACAGAAAAAGCCTTTTGCAGCAGGCTG  <  1:433103/235‑1                                                                                                                                                                                                     GAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCAGGTCGGTGCAGGGCCCTTTGCAGCGTTTTATCTGGTACTGCAGGCATGGCCGGGTGCGGTTGGCGTAGTAGCTGTCTTCGCACTGACGCACAGAAAAAGCCTATTG            <  1:402660/225‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGACCTGGTGACTGCCGAGGAATACGCAGAGGACGTTCGTCATTCGGTGATGTTTCTGGAAGGGCGTAGCCAGCAACTGGGCAATGAGTTGAACGCCGAGATGGAAAAGGCCGCCATGGCCCTCGATTTCGAAAAAGCCGCCGAGCTGCGCGACCAGATCGCCTTGTTGCGCCGCGTGCAGGACCAACAGTACATCGAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4634574‑4634373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgagggcCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTGGCTACGCCCTTCCAGAAACATCACCGAATGACGAACGTCCTCTGCGTATTCCTCGGCAGTCACCAGGTCGGTGCAGGGCCCTTTGCAGCGTTTTATCTGGTACTGCAGGCATGGCCGGGTGCGGTTGGCGTAGTAGCTGTCTTCGCACTGACGCACAGAAAAAGCCTTTTGCAGCAGGCTG  >  AE015451/4634457‑4634685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.