New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4861128 =	42 (0.960)	4 (0.110)	4/292	NT	12.0%	intergenic (‑79/+158)	ligA/PP_4275	DNA ligase/putative cell division protein ZipA
	?	AE015451	4861219 =	23 (0.620)					intergenic (‑170/+67)	ligA/PP_4275	DNA ligase/putative cell division protein ZipA

GTATCGTCGAGTTCGAGCGCCGTGCGCTAACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4861329‑4861128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggtttacccgcgaagaggcCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTCGTCCTTGAGCTCACCGTTCAGTTCGTGGGCCAGCTTGCGTGCCGCGGCAACCATCACGT  >  AE015451/4861219‑4861437                                                                                                                                                                                                                                                                                                                                                                                                                                       GTATCGTCGAGTTCGAGCGCCGTGCGCTAACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGC                                                                                                                                                                                                                                     <  1:65455/194‑1          AGTTCGAGCGCCGTGCGCTAACCCAGAAGCGCTGACAGATCCAGCCGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTCCCC                                                                                                                                                                                                                                       <  1:128599/183‑1                                    gAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGC                                                                                                                                                                                                                                     <  1:222136/158‑1                                                                                                                     gTCGCGGGTAAACCCGCGCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGA                                                                                                                                                                                                                                <  2:23237/82‑1                                                                                                                                  CCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTC                                                             >  2:595841/1‑233                                                                                                                                                      CCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTCGTCCTTGAGCTCACCG                                             <  1:595843/229‑1                                                                                                                                                         CCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCA                                                                                                                                                                                            >  1:360780/1‑83                                                                                                                                                         CCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCA                                                                                                                                                                                            <  2:360778/83‑1                                                                                                                                                                                   GAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTCGTCCTTGAGCTCACCGTTCAGTTCGTGGGCCAGCTTGCGTGCCGCGGCAAC          <  1:747560/235‑1                                                                                                                                                                                        GGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCA                                                                                                                                                                                            <  1:639358/52‑1                                                                                                                                                                                        GGTTTACCCGCGAAGAGGCCGGCA                                                                                                                                                                                                                        <  2:758303/24‑1                                                                                                                                                                                         GTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTCGTCCTTGAGCTCACCGTTCAGTTCGTGGGCCAGCTTGCGTGCCGCGGCAACCATCAC    >  1:363625/1‑235                                                                                                                                                                                         GTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTG                                                                                     >  1:499332/1‑154                                                                                                                                                                                         GTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTG                                                                                     <  2:499330/154‑1                                                                                                                                                                                           TTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTCGTCCTTGAGCTCACCGTTCAGTTCGTGGGCCAGCTTGCGTGCCGCGGCAACCATCACGT  >  1:374650/1‑235                                                                                                                                                                                             cCCCGCGAAGAGGCCGGCACAGGCACCGACGATCCCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGC                                                                           <  2:222134/159‑1                                                                                                                                                                                               CCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTC                                                                                       <  2:563996/146‑1                                                                                                                                                                                                 GCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCA                                                                          >  2:372029/1‑157                                                                                                                                                                                                  CGAAGGGGCCGGCACAGGCAACGACGATACCCGAAC                                                                                                                                                                                                  <  2:523137/36‑1                                                                                                                                                                                                    cAGAGGCCGGCACAGGCAACGACGATACCCGATCCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGGGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTC                                                                                              <  2:374424/133‑1                                                                                                                                                                                                      GAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTCGTCCTTGAGCTCACCGTTCAGTTCGTGGGCCAGCTTGCGTGCCGCGGCAACCATCA     >  2:726200/1‑221                                                                                                                                                                                                       AGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGTATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTTGTGGTCGGTGGTCTGGGC                                                                                  >  1:244009/1‑143                                                                                                                                                                                                                                                                                                                                                                                                                                       GTATCGTCGAGTTCGAGCGCCGTGCGCTAACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4861329‑4861128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggtttacccgcgaagaggcCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCACGCTGCGCTGGTCGTCCTTGAGCTCACCGTTCAGTTCGTGGGCCAGCTTGCGTGCCGCGGCAACCATCACGT  >  AE015451/4861219‑4861437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.