New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4917964	26 (0.600)	3 (0.070)	3/316	NT	10.9%	coding (363/1557 nt)	PP_4328	conserved protein of unknown function
	?	AE015451	= 4917966	25 (0.620)					coding (365/1557 nt)	PP_4328	conserved protein of unknown function

GAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4917722‑4917964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaaggtgccgACCGGCACCTTGCTGGTGTCCAGCTGGGTGAGGGTGGCGACCTGGCTGGCGCTGGCCTGTTGCAGCATGATCGCCAGGCGATTGCTTTCGGTCTGGCTGACGGTGATCTGGCTGCCCTGGGGCAGCGGCTGGCTGGCGTTGGCCTGAAGCTGGGTCTGCACGCCG  <  AE015451/4917966‑4917802                                                                                                                                                                                                                                                                                                                                                                                                                          GAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGCCACCAGCA                                                                                                                                                                               >  1:95098/1‑235                                                             CTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCcg                                                                                                                                                                                 >  1:153707/1‑171                                                               ACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGC                                                                                                                                                                                >  1:468654/1‑172                                                                                                                                                                                         AACAGGCCAGCGCCAGCCAGGTCGCCACCCTCAACCAGCTGGGCACCAGCAAGGAGCCGACCGGCACCTTCCTGGTGTCCTGCTGGGTGAGGGTGGCGAGCTGGCCGGCGCTGG                                                                                                                >  1:621934/1‑114                                                                                                                                                                                              GCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGACCGGCACCTTGCTGGTGTCCAGCTGGGTGAGGGTGGCGACCTGGCTGGCGCTGGCCTGTTGCAGCATGATCGCCAGGCGATTGCTTTCGGTCTGGCTGACGGTGATCTGGCTGCCCTGGGGCAGCGGCTGGCTGGCGTTGGCCTGA                    >  1:699957/1‑201                                                                                                                                                                                                     CCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGACCGGCACCTTGCTGGTGTCCAGCTGGGGGAGGGTGGCGACCTGGCTGGCGCTGGCCTTTTGCAGCATGATCGCCAGGCGATTGCTTTCGGTCTGGCTGACGGTGATCTGGCTGCCCTGGGGC                                            >  1:242017/1‑170                                                                                                                                                                                                                                       CAGCAAGGTGCCGACCGGCACCTTGCTGGTGTCCAGCTGGGTGAGGGTGGCGACCT                                                                                                                            <  2:22858/56‑1                                                                                                                                                                                                                                                  CGACCGGCACCTTGCTGGTGTCCAGCTGGGTGAGGGTGGCGACCTGGCTGGCGCTGGCCTGTTGCAGCATGATCGCCAGGCGATTGCTTTCGGTCTGGCTGACGGTGATCTGGCTGCCCTGGGGCAGCGGCTGGCTGGCGTTGGCCTGAAGCTGGGTCTGCACGCCG  >  2:246907/1‑167                                                                                                                                                                                                                                                                                                                                                                                                                          GAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4917722‑4917964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaaggtgccgACCGGCACCTTGCTGGTGTCCAGCTGGGTGAGGGTGGCGACCTGGCTGGCGCTGGCCTGTTGCAGCATGATCGCCAGGCGATTGCTTTCGGTCTGGCTGACGGTGATCTGGCTGCCCTGGGGCAGCGGCTGGCTGGCGTTGGCCTGAAGCTGGGTCTGCACGCCG  <  AE015451/4917966‑4917802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.