New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4917964	26 (0.600)	3 (0.070)	3/316	NT	10.9%	coding (363/1557 nt)	PP_4328	conserved protein of unknown function
	?	AE015451	= 4917966	25 (0.620)					coding (365/1557 nt)	PP_4328	conserved protein of unknown function

GTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCATTGGCAGCCTGCTCAGCGCCCTGGTGCAGGGTGATCAGTCATTGCGCTTCGTGCCGCTCAGCGGCAGGCAGGACCAACTCAGCAT  >  AE015451/4917748‑4918200                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           gTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTgcaag                                                                                                                                                                                                                           <  1:785984/236‑1 (MQ=255)                 cAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGaccaa                                                                                                                                                                                                           <  1:422187/236‑1 (MQ=255)                                            aTGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGcc                                                                                                                                                                                 <  1:424905/235‑1 (MQ=255)                                                       cGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTcg                                                                                                                                                                                                                                          >  2:246907‑M2/1‑165 (MQ=255)                                                             gCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCgg                                                                                                                                                                <  1:687068/235‑1 (MQ=255)                                                               aGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTAACCAACCAGCTGCTGGccc                                                                                                                                                                                             >  2:590752/1‑204 (MQ=255)                                                                         tCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTcggcaccttgctggtgtccagctgggtgagggtggcgacctggctggcgctggc                                                                                                                                                                                      >  1:699957‑M2/1‑147 (MQ=255)                                                                                            tggCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTAGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGcc                                                                                                                                                                                              >  1:718909/3‑174 (MQ=255)                                                                                                tGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGCGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAgctgct                                                                                                                                                                                                  >  2:200113/1‑166 (MQ=255)                                                                                                 gCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAAAAGGCCAGCGCCAGCCAGGTCGCCACCCTCCCCCAGCTGGACACCAGCAAGGTGCCGGTcggcaccttgctggtgtccagctgggtgagggtggcgacctggctgg                                                                                                                                                                                             >  1:242017‑M2/1‑123 (MQ=255)                                                                                                        ggCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACt                                                                                                                    <  1:401305/236‑1 (MQ=255)                                                                                                               aGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATc                                                                                                             >  1:82389/1‑236 (MQ=255)                                                                                                                          aGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCTAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAgcc                                                                                                      <  1:18105/232‑1 (MQ=255)                                                                                                                             cAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTc                                                                                                                                              <  2:369727/189‑1 (MQ=255)                                                                                                                              aGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGTCCGTGTACCGGgcg                                                                                                                                                             >  1:92434/1‑173 (MQ=255)                                                                                                                                           tCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCt                                                                                                                                                  <  2:70683/171‑1 (MQ=255)                                                                                                                                                       cATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCGCACCCAGCGGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAAc                                                                                                                                                                              <  2:16773/131‑1 (MQ=255)                                                                                                                                                          gctgcAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGGACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGcc                                                                                                                               >  2:147160/1‑175 (MQ=255)                                                                                                                                                            gtcAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCa                                                                                                                                   <  2:420508/167‑1 (MQ=255)                                                                                                                                                               aaCAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCa                                                                                       <  1:398376/210‑1 (MQ=255)                                                                                                                                                                 cAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCa                                                                                                                                       <  1:287171/160‑1 (MQ=255)                                                                                                                                                                     ccagcgccggcCAGCTCGCCACCCTCACCCAGCAGGACACCAGGAAGGTGCCGGTcggctccttgctggtgcccagctggttgagggtggcgacctggctggcgctggcctgtt                                                                                                                                                                                 >  1:621934‑M2/1‑55 (MQ=255)                                                                                                                                                                            cagccagGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACt                                                                                                                    >  2:398374/1‑168 (MQ=255)                                                                                                                                                                            cagccagGTCGCCACCATCACCCAGCTGGACACCAGCCAGGTGCCGGTCGGCCCCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAAcc                                                                                                                                                                             >  2:76175/1‑111 (MQ=255)                                                                                                                                                                                 agGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTcggcaccttgctg                                                                                                                                                                                                                               <  2:22858‑M2/56‑14 (MQ=255)                                                                                                                                                                                   gTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAgcccgcgcc                                                                                                <  2:82388/181‑1 (MQ=255)                                                                                                                                                                                    tCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCa                                                                                                                                   <  2:352004/145‑1 (MQ=255)                                                                                                                                                                                      gCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAgcccgcc                                                                                                  >  2:661025/1‑175 (MQ=255)                                                                                                                                                                                         ccccTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCTTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCt                                                                                                                                                  <  2:431897/124‑1 (MQ=255)                                                                                                                                                                                                           acCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAAc                                                                                                                                                                              >  2:691533/1‑79 (MQ=255)                                                                                                                                                                                                              aGCAAGGTGCCGGTCGGCACCGTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCATTGGCAGCCTGCTCAgc                                                                      <  2:402387/180‑1 (MQ=255)                                                                                                                                                                                                                          gTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCATTGGCAGCCTGCTCAGCGCCCTGGTGCAGGGTGATCAGTCATTGCGCTTCGTGCCGCTCAGCGGCAGGCAGGACCAACTCAGCAt  >  1:460841/1‑236 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           GTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCATTGGCAGCCTGCTCAGCGCCCTGGTGCAGGGTGATCAGTCATTGCGCTTCGTGCCGCTCAGCGGCAGGCAGGACCAACTCAGCAT  >  AE015451/4917748‑4918200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.