New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 491796426 (0.600)3 (0.070) 3/316 NT 10.9% coding (363/1557 nt) PP_4328 conserved protein of unknown function
?AE015451 = 4917966 25 (0.620)coding (365/1557 nt) PP_4328 conserved protein of unknown function

GTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCATTGGCAGCCTGCTCAGC  >  AE015451/4917748‑4918132
                                                                                                                                                                                                                        |                                                                                                                                                                        
gTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTgcaag                                                                                                                                                       <  1:785984/236‑1 (MQ=255)
                cAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGaccaa                                                                                                                                       <  1:422187/236‑1 (MQ=255)
                                           aTGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGcc                                                                                                             <  1:424905/235‑1 (MQ=255)
                                                      cGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTcg                                                                                                                                                                      >  2:246907‑M2/1‑165 (MQ=255)
                                                            gCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCgg                                                                                            <  1:687068/235‑1 (MQ=255)
                                                              aGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTAACCAACCAGCTGCTGGccc                                                                                                                         >  2:590752/1‑204 (MQ=255)
                                                                        tCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTcggcaccttgctggtgtccagctgggtgagggtggcgacctggctggcgctggc                                                                                                                  >  1:699957‑M2/1‑147 (MQ=255)
                                                                                           tggCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTAGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGcc                                                                                                                          >  1:718909/3‑174 (MQ=255)
                                                                                               tGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGCGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAgctgct                                                                                                                              >  2:200113/1‑166 (MQ=255)
                                                                                                gCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAAAAGGCCAGCGCCAGCCAGGTCGCCACCCTCCCCCAGCTGGACACCAGCAAGGTGCCGGTcggcaccttgctggtgtccagctgggtgagggtggcgacctggctgg                                                                                                                         >  1:242017‑M2/1‑123 (MQ=255)
                                                                                                       ggCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACt                                                <  1:401305/236‑1 (MQ=255)
                                                                                                              aGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATc                                         >  1:82389/1‑236 (MQ=255)
                                                                                                                         aGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCTAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAgcc                                  <  1:18105/232‑1 (MQ=255)
                                                                                                                            cAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTc                                                                          <  2:369727/189‑1 (MQ=255)
                                                                                                                             aGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGTCCGTGTACCGGgcg                                                                                         >  1:92434/1‑173 (MQ=255)
                                                                                                                                          tCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCt                                                                              <  2:70683/171‑1 (MQ=255)
                                                                                                                                                      cATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCGCACCCAGCGGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAAc                                                                                                          <  2:16773/131‑1 (MQ=255)
                                                                                                                                                         gctgcAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGGACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGcc                                                           >  2:147160/1‑175 (MQ=255)
                                                                                                                                                           gtcAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCa                                                               <  2:420508/167‑1 (MQ=255)
                                                                                                                                                              aaCAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCa                   <  1:398376/210‑1 (MQ=255)
                                                                                                                                                              aaCAGGCCAGCGCCAGCCAGGTCGCCACCCTCAACCAGCTGGGCACCAGCAAGGAGCCGaccggcaccttcctggtgtcctgctgggtgagggtggcgagctggccggcgctgg                                                                                                                   >  1:621934‑M1/1‑59 (MQ=255)
                                                                                                                                                                cAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCa                                                                   <  1:287171/160‑1 (MQ=255)
                                                                                                                                                                   gccagcgccagcCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGaccggcaccttgctggtgtccagctgggtgagggtggcgacctggctggcgctggcctgttgcagcatgatcgccaggcgattgctttcggtctggctgacggtgatctggctgccctggggcagcggctggctggcgttggcctga                       >  1:699957‑M1/1‑54 (MQ=255)
                                                                                                                                                                    ccagcgccggcCAGCTCGCCACCCTCACCCAGCAGGACACCAGGAAGGTGCCGGTcggctccttgctggtgcccagctggttgagggtggcgacctggctggcgctggcctgtt                                                                                                             >  1:621934‑M2/1‑55 (MQ=255)
                                                                                                                                                                          ccagccagGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGaccggcaccttgctggtgtccagctgggggagggtggcgacctggctggcgctggccttttgcagcatgatcgccaggcgattgctttcggtctggctgacggtgatctggctgccctggggc                                               >  1:242017‑M1/1‑47 (MQ=255)
                                                                                                                                                                           cagccagGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACt                                                >  2:398374/1‑168 (MQ=255)
                                                                                                                                                                           cagccagGTCGCCACCATCACCCAGCTGGACACCAGCCAGGTGCCGGTCGGCCCCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAAcc                                                                                                         >  2:76175/1‑111 (MQ=255)
                                                                                                                                                                                agGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTcggcaccttgctg                                                                                                                                                           <  2:22858‑M2/56‑14 (MQ=255)
                                                                                                                                                                                  gTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAgcccgcgcc                            <  2:82388/181‑1 (MQ=255)
                                                                                                                                                                                   tCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCa                                                               <  2:352004/145‑1 (MQ=255)
                                                                                                                                                                                     gCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAgcccgcc                              >  2:661025/1‑175 (MQ=255)
                                                                                                                                                                                        ccccTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCTTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCt                                                                              <  2:431897/124‑1 (MQ=255)
                                                                                                                                                                                                          acCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAAc                                                                                                          >  2:691533/1‑79 (MQ=255)
                                                                                                                                                                                                            cAGCAAGGTGCCGaccggcaccttgctggtgtccagctgggtgagggtggcgacct                                                                                                                               <  2:22858‑M1/56‑44 (MQ=255)
                                                                                                                                                                                                             aGCAAGGTGCCGGTCGGCACCGTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCATTGGCAGCCTGCTCAgc  <  2:402387/180‑1 (MQ=255)
                                                                                                                                                                                                                       cGaccggcaccttgctggtgtccagctgggtgagggtggcgacctggctggcgctggcctgttgcagcatgatcgccaggcgattgctttcggtctggctgacggtgatctggctgccctggggcagcggctggctggcgttggcctgaagctgggtctgcacgccg     >  2:246907‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                        |                                                                                                                                                                        
GTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGCCGCTGCCCCAGGGCAGCCAGATCACCGTCAGCCAGACCGAAAGCAATCGCCTGGCGATCATGCTGCAACAGGCCAGCGCCAGCCAGGTCGCCACCCTCACCCAGCTGGACACCAGCAAGGTGCCGGTCGGCACCTTGCTGCAAGGCAAGGTCCTGACCAACCAGCTGCTGGCCCAGGCACCCGGCCAACCGGCCGTGTACCGGGCGCTGGTCAGCCTGCTCAACAGCAACCAGGCCGGTGCCACACTGAGCATCGACAGCCCGCGCCCGCTGGTCATTGGCAGCCTGCTCAGC  >  AE015451/4917748‑4918132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.