New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5141269	38 (0.870)	3 (0.070)	3/326	NT	6.6%	coding (293/894 nt)	PP_4525	Transcriptional regulator, LysR family
	?	AE015451	= 5141314	49 (1.180)					coding (248/894 nt)	PP_4525	Transcriptional regulator, LysR family

GCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5141085‑5141269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgtgcGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTGGCGCGCTATCACCAGTCTTACCCGCAGGTGAACCTGCAAGTGCGTGCAGCACCCAGCGGCGAGTTGCTTGAAGGGCTGTTGAACCACACCCTGGATGCTGCTCTTGTGGACGGGCCACCGAGCCTTGCCGGGCTGGATGGCGTGCCGCTGTGCGAT  <  AE015451/5141314‑5141082                                                                                                                                                                                                                                                                                                                                                                                                                                    GCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCG                                                                                                                                                                                                                                                 <  2:768007/179‑1                                                  AGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGC                                                                                                                                                                                                                                                <  2:103364/131‑1                                                                                                                       AGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGG                                                                                                                                                                                                          >  1:476517/1‑100                                                                                                                              CCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGC                                                                                                                                                                     >  1:643414/1‑130                                                                                                                              CCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGC                                                                                                                                                                     <  2:643412/130‑1                                                                                                                                                                                       TGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTGGCGCGCTATCACCAGTCTTACCCGCAGGTGAACCTGCAAGTGCGTGCAGCACCCAGCGGCGAGTTGCTTGAAGGGCTGTTGAACCACACCCTGGATGCTGCTCTTGTGGACGGGCCACCGAGCCTTGCCGGGCTGGATGGCGTGCCGCTGTGCGA   <  1:348192/235‑1                                                                                                                                                                                        GCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTGGCGCGCTATCACCAGTCTTACCCGCAGGTGAACCTGCAAGTGCGTGCAGCACCCAGCGGCGAGTTGCTTGAAGGGCTGTTGAACCACACCCTGGATGCTGCTCTTGTGGACGGGCCACCGAGCCTTGCCGGGCTGGATGGCGTGCCGCTGTGCGAT  >  1:692823/1‑235                                                                                                                                                                                         CGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTGGCGCGCTATCACCAGTCTTACCCGCAGGTGAACCTGCAAGTGCGTGCAGCACCCAGCGGCGAGTTGCTTGAAGGGCTGTTGAACCACACCCTGGATGCTGCTCTTGTGGACGGGCCACCGA                                     <  1:188925/199‑1                                                                                                                                                                                                                                                                                                                                                                                                                                    GCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5141085‑5141269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgtgcGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTGGCGCGCTATCACCAGTCTTACCCGCAGGTGAACCTGCAAGTGCGTGCAGCACCCAGCGGCGAGTTGCTTGAAGGGCTGTTGAACCACACCCTGGATGCTGCTCTTGTGGACGGGCCACCGAGCCTTGCCGGGCTGGATGGCGTGCCGCTGTGCGAT  <  AE015451/5141314‑5141082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.