New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5141269	38 (0.870)	3 (0.070)	3/326	NT	6.6%	coding (293/894 nt)	PP_4525	Transcriptional regulator, LysR family
	?	AE015451	= 5141314	49 (1.180)					coding (248/894 nt)	PP_4525	Transcriptional regulator, LysR family

AGTACCGCCGGGTGCTCGGGGCTGGTGATCAGTACCAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGTGGAAAGGTTTGATGGCACCCGGTGCAGGCGCTCTGCGGCG  >  AE015451/5141038‑5141502                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                          aGTACCGCCGGGTGCTCGGGGCTGGTGATCAGTACCAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGt                                                                                                                                                                                                                                        <  1:708058/235‑1 (MQ=255)  gTACCGCCGGGTGCTCGGGGCTGGTGATCAGTACCAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTAc                                                                                                                                                                                                                                      >  1:777127/1‑236 (MQ=255)         cgGGTGCTCGGGGCTGGTGATCAGTACCAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTcc                                                                                                                                                                                                                               >  1:752760/1‑236 (MQ=255)                   gggCTGGTGATCAGTACCAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGa                                                                                                                                                                                                                      <  1:571642/235‑1 (MQ=255)                               aGTACCAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCa                                                                                                                                                                                                              >  1:279774/1‑231 (MQ=255)                                   ccAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGa                                                                                                                                                                                                     >  1:567162/1‑236 (MQ=255)                                             aTCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACgc                                                                                                                                                                                            >  1:692823‑M2/1‑233 (MQ=255)                                              tCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACgca                                                                                                                                                                                           <  1:348192‑M2/235‑4 (MQ=255)                                                           cGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCAGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAgc                                                                                                                                                                                <  2:492663/233‑1 (MQ=255)                                                            gCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCt                                                                                                                                                                             <  1:411007/235‑1 (MQ=255)                                                                                tCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACg                                                                                                                                                                                             <  1:188925‑M2/199‑2 (MQ=255)                                                                                  ggTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACg                                                                                                                                                      >  1:285652/1‑236 (MQ=255)                                                                                                        caTCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCAc                                                                                                                                 <  1:433747/235‑1 (MQ=255)                                                                                                         aTCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCt                                                                                                                               <  1:617828/236‑1 (MQ=255)                                                                                                                gtgtGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGa                                                                                                                                                            >  1:502752/1‑200 (MQ=255)                                                                                                                gtgtGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGa                                                                                                                                                            <  2:502750/200‑1 (MQ=255)                                                                                                                      ttCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCCGACATACGGTTGGCATAGTCcag                                                                                                                                       >  1:377530/1‑215 (MQ=255)                                                                                                                            aGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTg                                                                                                            >  1:506896/1‑236 (MQ=255)                                                                                                                              cccTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAg                                                                                                                                            >  2:536842/1‑202 (MQ=255)                                                                                                                                   cAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCAt                                                                                                                                              >  2:721097/1‑195 (MQ=255)                                                                                                                                   cAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCg                                                                                                                   >  2:385906/1‑222 (MQ=255)                                                                                                                                          cTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGAc                                                                                                 <  2:777125/233‑1 (MQ=255)                                                                                                                                                               cacTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGtgc                                                                                                                                                                                                                                      >  2:203437/1‑77 (MQ=255)                                                                                                                                                                   tGCAGGTTCACCTGCGGGTAAGATTGGTGATAGCGCGCCAGCAACGCCGGGAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTcc                                                                                                                                                                                                                 >  2:390291/1‑96 (MQ=255)                                                                                                                                                                   ggCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCATGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGcc                                                                        >  2:742522/2‑233 (MQ=255)                                                                                                                                                                      aGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCgtggcggtcagccggctggggacttcgtgctgg                                                                                                                                                                                                          >  1:476517‑M1/1‑67 (MQ=255)                                                                                                                                                                             ccTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCgtggcggtcagccggctggggacttcgtgctggggaccatgtacagcacggcggcgacccacttgccggc                                                                                                                                                                     >  1:643414‑M1/1‑60 (MQ=255)                                                                                                                                                                             ccTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCgtggcggtcagccggctggggacttcgtgctggggaccatgtacagcacggcggcgacccacttgccggc                                                                                                                                                                     <  2:643412‑M1/130‑71 (MQ=255)                                                                                                                                                                             ccTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCctgct                                                                                                                       <  1:449602/176‑1 (MQ=255)                                                                                                                                                                             ccTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCctgct                                                                                                                       >  2:449600/1‑176 (MQ=255)                                                                                                                                                                               tGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGAc                                                                                                 >  2:483069/1‑196 (MQ=255)                                                                                                                                                                               tGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGAc                                                                                                 <  1:483071/196‑1 (MQ=255)                                                                                                                                                                               tGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGtt                                                                                              >  2:295278/1‑199 (MQ=255)                                                                                                                                                                                           tGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGgc                                              <  1:65427/235‑1 (MQ=255)                                                                                                                                                                                            ggTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGAc                                                                                                 <  1:57740/183‑1 (MQ=255)                                                                                                                                                                                                 tAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGgc                                                                                                       >  2:388104/1‑172 (MQ=255)                                                                                                                                                                                                 tAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGTGGa                                       >  1:457505/1‑236 (MQ=255)                                                                                                                                                                                                 tAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGAACGGCGCCCAGCGCAtcgt                                                                                                                                                                         >  2:334484/1‑106 (MQ=255)                                                                                                                                                                                                      cgcCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGccc                                                                       <  1:295280/199‑1 (MQ=255)                                                                                                                                                                                                       gcCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGTGGAAAGGt                                  >  1:136528/1‑235 (MQ=255)                                                                                                                                                                                                         cAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGTGGAAAGGTTTg                               <  1:420885/236‑1 (MQ=255)                                                                                                                                                                                                                gCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACgcacggcggcgacccacttgccggcgttgctggcgcgctatcaccagtcttacccgcagg                                                                                                                                  <  2:643412‑M2/130‑61 (MQ=255)                                                                                                                                                                                                                gCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACgcacggcggcgacccacttgccggcgttgctggcgcgctatcaccagtcttacccgcagg                                                                                                                                  >  1:643414‑M2/1‑70 (MQ=255)                                                                                                                                                                                                                gCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGTGGAAAGGTTTGATGGc                          <  2:752758/234‑1 (MQ=255)                                                                                                                                                                                                                  cGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGCTCAACGCCCAGCTGctcctc                                                            >  1:231805/1‑198 (MQ=255)                                                                                                                                                                                                                         tGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGTGGAAAGGTTTGATGGCACCCGGTGCAg               <  1:575611/236‑1 (MQ=255)                                                                                                                                                                                                                          gggTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATAc                                                                                                                                                       >  2:163708/1‑99 (MQ=255)                                                                                                                                                                                                                           ggTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGt                                          <  1:536844/207‑1 (MQ=255)                                                                                                                                                                                                                               gcccccGTGCTGTACATGGTCCCCAGCACGAACTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGAc                                                                                                 <  2:721563/148‑1 (MQ=255)                                                                                                                                                                                                                                      tgcgtggcggtcagccggctggggacttcgtgctggggaccatgtacagcacggcggcgacccacttgccggcgttgctggcgcgctatcaccagtcttacccgcaggtgaacctgcaagtgcgtgcagcacccagcggcgagttgcttgaagggctgttgaaccacaccctggatgctgctcttgtggacgggccaccgagccttgccgggctggatggcgtgccgctgtgcga   <  1:348192‑M1/235‑233 (MQ=255)                                                                                                                                                                                                                                       gcgtggcggtcagccggctggggacttcgtgctggggaccatgtacagcacggcggcgacccacttgccggcgttgctggcgcgctatcaccagtcttacccgcaggtgaacctgcaagtgcgtgcagcacccagcggcgagttgcttgaagggctgttgaaccacaccctggatgctgctcttgtggacgggccaccgagccttgccgggctggatggcgtgccgctgtgcgat  >  1:692823‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                        cgtggcggtcagccggctggggacttcgtgctggggaccatgtacagcacggcggcgacccacttgccggcgttgctggcgcgctatcaccagtcttacccgcaggtgaacctgcaagtgcgtgcagcacccagcggcgagttgcttgaagggctgttgaaccacaccctggatgctgctcttgtggacgggccaccga                                     <  1:188925‑M1/199‑199 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                          AGTACCGCCGGGTGCTCGGGGCTGGTGATCAGTACCAGTTGCTCATCGCACAGCGGCACGCCATCCAGCCCGGCAAGGCTCGGTGGCCCGTCCACAAGAGCAGCATCCAGGGTGTGGTTCAACAGCCCTTCAAGCAACTCGCCGCTGGGTGCTGCACGCACTTGCAGGTTCACCTGCGGGTAAGACTGGTGATAGCGCGCCAGCAACGCCGGCAAGTGGGTCGCCGCCGTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAGGAACAGTTCAACGCCCAGCTGCTCCTCGAGTTGGCGCAGGCGCGTGGAAAGGTTTGATGGCACCCGGTGCAGGCGCTCTGCGGCG  >  AE015451/5141038‑5141502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.