| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5333105 | 30 (0.690) | 4 (0.090) | 4/330 | NT | 12.5% | coding (840/903 nt) | gluQ | Glutamyl‑Q tRNA(Asp) synthetase |
| ? | AE015451 | = 5333190 | 27 (0.640) | intergenic (+22/‑221) | gluQ/PP_5704 | Glutamyl‑Q tRNA(Asp) synthetase/conserved protein of unknown function | |||||
GACAACACCCCGCGCCAGCTGTACCTGCAGGAACTGCTGGGCTTCTCACAGCCGCGTTACCTGCATATTCCGCTGATCGTGCAGCCGGATGGGCACAAGCTGGGCAAGTCGTACCGTTCGCCGCCACTGCAGGCGGAGCATGCTACCCCCCTGCTGCTGCGGGCACTGCGGGCGCTGGGGCAGGAGACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5332866‑5333105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGACTGCCAGCACCTCTGCCGGCGTCGCCAACAGCAGTTCCGGGTCTGTCTCCTGCCCCAGCGCCCGCAGTGCCCGCAGCAGCAGGGGGGTAGCATGCTCCGCCTGCAGTGGCGGCGAACGGTACGACTTGCCCAGCTT < AE015451/5333190‑5332962 GACAACACCCCGCGCCAGCTGTACCTGCAGGAACTGCTGGGCTTCTCACAGCCGCGTTACCTGCATATTCCGCTGATCGTGCAGCCGGATGGGCACAAGCTGGGCAAGTCGTACCGTTCGCCGCCACTGCAGGCGGAGCATGCTACCCCCCTGCTGCTGCGGGCACTGCGGGCGCTGGGGCAGGAGACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCG < 1:218436/235‑1GACAACACCCCGCGCCAGCTGTACCTGCAGGAACTGCTGGGCTTCTCACAGCCGCGTTACCTGCATATTCCGCTGATCGTGCAGCCGGATGGGCACAAGCTGGGCAAGTCGTACCGTTCGCCGCCACTGCAGGCGGAGCATGCTACCCCCCTGCTGCTGCGGGCACTGCGGGCGCTGGGGCAGGAGACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCG < 1:538095/235‑1 ACAACACCCCGCGCCAGCTGTACCTGCAGGAACTGCTGGGCTTCTCACAGCCGCGTTACCTGCATATTCCGCTGATCGTGCAGCCGGATGGGCACAAGCTGGGCAAGTCGTACCGTTCGCCGCCACTGCAGGCGGAGCATGCTACCCCCCTGCTGCTGCGGGCACTGCGGGCGCTGGGGCAGGAGACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGC < 1:312826/235‑1 GCCAGCTGTACCTGCAGGAACTGCTGGGCTTCTCACAGCCGCGTTACCTGCATATTCCGCTGATCGTGCAGCCGGATGGGCACAAGCTGGGCAAGTCGTACCGTTCGCCGCCACTGCAGGCGGAGCATGCTACCCCCCTGCTGCTGCGGGCACTGCGGGCGCTGGGGCAGGAGACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCCCGCGAAG < 1:552722/235‑1 GCTTCTCACAGCCGCGTTACCTGCATATTCCGCTGATCGTGCAGCCGGATGGGCACAAGCTGGGCAAGTCGTACCGTTCGCCGCCACTGCAGGCGGAGCATGCTACCCCCCTGCTGCTGCGGGCACTGCGGGCGCTGGGGCAGGAGACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGC > 1:584258/1‑198 CCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGT‑‑CGCGCCCGCGAAGAGGCCGGGAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCG > 1:244597/1‑131 TTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGC > 1:373585/1‑73 TTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGC < 2:373583/73‑1 GCGCGCCCGCGCAGAGGCCGGT > 2:220536/1‑22 GCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGACTGCCAGCACCTCTGCCGGCGTCGCCca > 2:767916/1‑125 GCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGACTGCCAGCACCTCTGCCGGCGTCGCCAACAGCAGTTCCGGGTCTGTCTCCTGCCCCAGCGCCCGCAGTGCCCGCAGCAGCAGGGGGGTAGCATGCTCCGCCTGCAGTGGCGGCGAACGGTACGACTTGCCCAGCTT > 2:457251/1‑233 GACAACACCCCGCGCCAGCTGTACCTGCAGGAACTGCTGGGCTTCTCACAGCCGCGTTACCTGCATATTCCGCTGATCGTGCAGCCGGATGGGCACAAGCTGGGCAAGTCGTACCGTTCGCCGCCACTGCAGGCGGAGCATGCTACCCCCCTGCTGCTGCGGGCACTGCGGGCGCTGGGGCAGGAGACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5332866‑5333105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGACTGCCAGCACCTCTGCCGGCGTCGCCAACAGCAGTTCCGGGTCTGTCTCCTGCCCCAGCGCCCGCAGTGCCCGCAGCAGCAGGGGGGTAGCATGCTCCGCCTGCAGTGGCGGCGAACGGTACGACTTGCCCAGCTT < AE015451/5333190‑5332962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |