New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5633065 =	35 (0.800)	5 (0.120)	5/324	NT	12.6%	coding (2595/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	AE015451	5633212 =	36 (0.870)					coding (2742/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

GGCGGCTTTCAGCCATGGCGCCCTTGAGCATCTCGATTACGCGGTCGGCGGAGTCTTCCTGCAAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCCTGGTTGTCCAGACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5633300‑5633065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGAGATGCTCAAGGGCGCCATGGCTGAAAGCCGCCTGGGCTGCCCGGACCGCCTGGCCGTGGACATCGGCCCGGTGATCGATGCCGAAGCCAAAGCCGGCATCGAGAAGCACATCCAGGGCATGCGCGAGAAAGGCCGCCCGGTCTACCAAGTCGCCATTGCCGATGCTGCCGAG  >  AE015451/5633212‑5633440                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCGGCTTTCAGCCATGGCGCCCTTGAGCATCTCGATTACGCGGTCGGCGGAGTCTTCCTGCAAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCCTGGTTGTCCAGACGGCCAGC                                                                                                                                                                                                                                        >  1:768861/1‑235                                                                                       CAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCCTGGTTGTCCAGACGGCCAGCGTTGCTCGGCCC                                                                                                                                                                                                                            <  2:652327/161‑1                                                                                                      CTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGGGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCCTGGTTGTCCAGACGGCCAGCGTTGCTC                                                                                                                                                                                                                                 <  2:704629/141‑1                                                                                                                           gCGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCCTGGTTGTCCAGACGGCCAGCGTTGCTCGG                                                                                                                                                                                                                               <  2:386567/121‑1                                                                                                                                                                                         GGTTTCGGCGATCAGCGGGATCGGGCGGCCGTGGTTGTCCAGACGGCCAGCGTTGCTCGGCCCTG                                                                                                                                                                                                                          <  2:742048/65‑1                                                                                                                                                                                          GTTTCGGCGATCAGCGGGACCGGGCGGCCCTGGTTGTCCAGACGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGAGATGCTCAA                                                                                                                                                                     <  2:215497/117‑1                                                                                                                                                                                                                                      GCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGAGATGCTCAAGGGCGCCATGGCTGAAAGCCGCCTGGGCTGCCCGGACCGCCTGGCCGTGGACATCGGCCCGGTGATCGATGCCGAAGCCAAAGCCGGCATCGAGAAGCACATCCAGGGCATGCGCGAGAAAGGCCGCCCGGTCTACCAAGTCGCCATTGCCGATGCTGCCGAG  <  1:652329/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCGGCTTTCAGCCATGGCGCCCTTGAGCATCTCGATTACGCGGTCGGCGGAGTCTTCCTGCAAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCCTGGTTGTCCAGACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5633300‑5633065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGAGATGCTCAAGGGCGCCATGGCTGAAAGCCGCCTGGGCTGCCCGGACCGCCTGGCCGTGGACATCGGCCCGGTGATCGATGCCGAAGCCAAAGCCGGCATCGAGAAGCACATCCAGGGCATGCGCGAGAAAGGCCGCCCGGTCTACCAAGTCGCCATTGCCGATGCTGCCGAG  >  AE015451/5633212‑5633440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.