| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5682323 | 30 (0.690) | 4 (0.090) | 3/336 | NT | 12.4% | coding (4570/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| ? | AE015451 | = 5682338 | 27 (0.630) | coding (4555/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGTTACCGAATCGTCCACCACCATCACCAGCAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5682288‑5682323‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGGTAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCATGGCCCTGCTGGAAGAGCACCGGCCCGACGTGTTGTTGCTGGACATCGAAATGCCGCGCATGGACGGCTTCGAGGTGGCCACACGCATCCGCCGTGACGCACGGCTG < AE015451/5682338‑5682105 GGTTACCGAATCGTCCACCACCATCACCAGCAAGGCCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGGTAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCAT < 1:256990/164‑1GGTTACCGAATCGTCCACCACCATCACCAGCAAGGCCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGGTAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCAT > 2:256988/1‑164 CACCACCATCACCAGCAAGGCCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGGTAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCAT > 1:651116/1‑149 CACCACCATCACCAGCAAGGCCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGGTAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCAT < 2:651114/149‑1 GCCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGGTAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCATGGCCCTGCTGGAAGAGCACCGGCCCGACGTGTTGTTGCTGGACATCGAAATGCCGCGCATGGACGGCTTCGAGGTGGCCACACGCATCCGCCGTGACGCACGGCTG < 1:752983/236‑1 GGTTACCGAATCGTCCACCACCATCACCAGCAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5682288‑5682323‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGGTAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCATGGCCCTGCTGGAAGAGCACCGGCCCGACGTGTTGTTGCTGGACATCGAAATGCCGCGCATGGACGGCTTCGAGGTGGCCACACGCATCCGCCGTGACGCACGGCTG < AE015451/5682338‑5682105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |