New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 5682323 | 30 (0.690) | 4 (0.090) | 3/336 | NT | 12.4% | coding (4570/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
? | AE015451 | = 5682338 | 27 (0.630) | coding (4555/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver | |||||
Rejected: Coverage evenness skew score above cutoff. |
CAGCCGTGCGTCACGGCGGATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGG > AE015451/5682105‑5682523 | cAGCCGTGCGTCACGGCGGATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGc > 1:752983/1‑236 (MQ=255) gcggATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGtt < 1:501884/236‑1 (MQ=255) gcggATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGt < 1:399603/235‑1 (MQ=255) ccACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCAcggcgcg > 2:508886/1‑198 (MQ=255) ccACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCAcggcgcg < 1:508888/198‑1 (MQ=255) tttCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCAcggcgcg > 2:634333/1‑171 (MQ=255) tttCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCAcggcgcg < 1:634335/171‑1 (MQ=255) cAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGcccgcttgcc < 1:313804/236‑9 (MQ=255) aacaacACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGcc > 1:344886/1‑236 (MQ=255) cacGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCca < 2:694757/233‑1 (MQ=255) gggCCGGTGCTCTTCCAGCAGGGCCATGGCATCGACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCGGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCgg < 2:38598/153‑1 (MQ=255) cagcagGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAg > 1:81801/1‑170 (MQ=255) agGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGccc > 1:596608/1‑207 (MQ=255) gggCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAgg > 2:678363/1‑212 (MQ=255) gCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCAt > 2:426776/1‑235 (MQ=255) ccTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTcccccc > 1:387930/1‑235 (MQ=255) ccGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGca > 1:271467/1‑198 (MQ=255) cGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCCGCCGTCGCCGCTGGCCGCGCAGCTGGCCcagccg > 2:259530/1‑181 (MQ=255) cGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGa > 1:341221/1‑231 (MQ=255) cGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAAcc > 1:512206/1‑236 (MQ=255) gCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGCTACCCCGGCa > 1:109748/1‑236 (MQ=255) aCGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACAGCGCGGCGCCGAGCCAAGCAACTGGCGTTgg > 1:274257/1‑117 (MQ=255) aCGCCCATGCCGTGGCGCTCCAGCAGCCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCCTCACCAGCAAGGCAcggcgc > 2:73462/1‑90 (MQ=255) tCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCgg < 1:678365/194‑1 (MQ=255) aTGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACcgc > 2:443153/1‑233 (MQ=255) gcTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACcgcg < 1:63469/224‑1 (MQ=255) cTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCgcgc > 1:107591/1‑145 (MQ=255) cagGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGa < 2:401527/201‑1 (MQ=255) ggcggcTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGc > 2:721762/1‑234 (MQ=255) gTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCCAGAATCAGCACCACCCGGCCATCGCCcagca > 2:81332/1‑178 (MQ=255) ggCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACcg > 2:727814/1‑158 (MQ=255) ggCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGGCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCGTTTCACCACGATCTCGCGGCTgg > 1:731425/1‑203 (MQ=255) cACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACt > 1:606687/1‑165 (MQ=255) | CAGCCGTGCGTCACGGCGGATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGG > AE015451/5682105‑5682523 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |