New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5682323	30 (0.690)	4 (0.090)	3/336	NT	12.4%	coding (4570/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	AE015451	= 5682338	27 (0.630)					coding (4555/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
Rejected: Coverage evenness skew score above cutoff.

CAGCCGTGCGTCACGGCGGATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCTCCTT  >  AE015451/5682105‑5682563                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                  cAGCCGTGCGTCACGGCGGATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGc                                                                                                                                                                                                                                 >  1:752983/1‑236 (MQ=255)                gcggATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGtt                                                                                                                                                                                                                  <  1:501884/236‑1 (MQ=255)                gcggATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGt                                                                                                                                                                                                                   <  1:399603/235‑1 (MQ=255)                                                                   cAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGcccgcttgcc                                                                                                                                                               <  1:313804/236‑9 (MQ=255)                                                                       aacaacACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGcc                                                                                                                                                           >  1:344886/1‑236 (MQ=255)                                                                            cacGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCca                                                                                                                                                         <  2:694757/233‑1 (MQ=255)                                                                                  gggCCGGTGCTCTTCCAGCAGGGCCATGGCATCGACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCGGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCgg                                                                                                                                                                                                                                   <  2:38598/153‑1 (MQ=255)                                                                                                 cagcagGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAg                                                                                                                                                                                                   >  1:81801/1‑170 (MQ=255)                                                                                                     agGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGccc                                                                                                                                                          >  1:596608/1‑207 (MQ=255)                                                                                                      gggCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAgg                                                                                                                                                    >  2:678363/1‑212 (MQ=255)                                                                                                        gCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCAt                                                                                                                           >  2:426776/1‑235 (MQ=255)                                                                                                                           ccTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTcccccc                                                                                                        >  1:387930/1‑235 (MQ=255)                                                                                                                                 ccGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGca                                                                                                                                       >  1:271467/1‑198 (MQ=255)                                                                                                                                  cGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCCGCCGTCGCCGCTGGCCGCGCAGCTGGCCcagccg                                                                                                                                                     >  2:259530/1‑181 (MQ=255)                                                                                                                                  cGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGa                                                                                                     >  1:341221/1‑231 (MQ=255)                                                                                                                                  cGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAAcc                                                                                                >  1:512206/1‑236 (MQ=255)                                                                                                                                       gCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGCTACCCCGGCa                                                                                           >  1:109748/1‑236 (MQ=255)                                                                                                                                         aCGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACAGCGCGGCGCCGAGCCAAGCAACTGGCGTTgg                                                                                                                                                                                                                >  1:274257/1‑117 (MQ=255)                                                                                                                                             tCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCgg                                                                                                                               <  1:678365/194‑1 (MQ=255)                                                                                                                                               aTGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACcgc                                                                                      >  2:443153/1‑233 (MQ=255)                                                                                                                                                         gcTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACcgcg                                                                                     <  1:63469/224‑1 (MQ=255)                                                                                                                                                          cTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCgcgc                                                                                                                                                                   >  1:107591/1‑145 (MQ=255)                                                                                                                                                                cagGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGa                                                                                                     <  2:401527/201‑1 (MQ=255)                                                                                                                                                                  ggcggcTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGc                                                                  >  2:721762/1‑234 (MQ=255)                                                                                                                                                                          gTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCCAGAATCAGCACCACCCGGCCATCGCCcagca                                                                                                                  >  2:81332/1‑178 (MQ=255)                                                                                                                                                                                                                         ggCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACcg                                                                                       >  2:727814/1‑158 (MQ=255)                                                                                                                                                                                                                         ggCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGGCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCGTTTCACCACGATCTCGCGGCTgg                                          >  1:731425/1‑203 (MQ=255)                                                                                                                                                                                                                           cACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACt                                                                              >  1:606687/1‑165 (MQ=255)                                                                                                                                                                                                                                   ggcgcCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCTCCtt  <  2:344884/233‑1 (MQ=255)                                                                                                                                                                                                                                        cGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCTCCt   <  2:512204/227‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                  CAGCCGTGCGTCACGGCGGATGCGTGTGGCCACCTCGAAGCCGTCCATGCGCGGCATTTCGATGTCCAGCAACAACACGTCGGGCCGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCTCCTT  >  AE015451/5682105‑5682563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.