| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5819873 | 45 (1.030) | 3 (0.070) | 3/324 | NT | 6.6% | coding (313/591 nt) | PP_5096 | putative factor involved in shape determination |
| ? | AE015451 | = 5819909 | 42 (1.020) | coding (349/591 nt) | PP_5096 | putative factor involved in shape determination | |||||
AAGGCCAACTTCTACAACCCGCTGTGCCAGTTCGCCGTTCGTGCCACCCAACCGCTGCTCAAGCCGATCCGCCGGATCATCCCTAGCGTTGGCGGGCTGGATACCTCGTCGCTACTGCTGGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5819657‑5819873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcatcgCCACCCAGAAAATCTTCAGGAACAGCGAGGTGATGCCGATGATCGCCCACATCAGCAGGTGCAGGACGTCGCCGAAGGTACCGTAGGTGACCATCAGCACAAAGCCCATCAGCAAGGCCTGGATGACCACCGCCAGCAGTAGCGACGAGGTATCCAGCCCGCCAACGCTAGGGATGATCCGGCGGATCGGCTTGAGCAGCGGTTGGGTGGCACGAACGGCGAACTGGCACAGCGG < AE015451/5819909‑5819675 AAGGCCAACTTCTACAACCCGCTGTGCCAGTTCGCCGTTCGTGCCACCCAACCGCTGCTCAAGCCGATCCGCCGGATCATCCCTAGCGTTGGCGGGCTGGATACCTCGTCGCTACTGCTGGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCG > 1:386066/1‑217AAGGCCAACTTCTACAACCCGCTGTGCCAGTTCGCCGTTCGTGCCACCCAACCGCTGCTCAAGCCGATCCGCCGGATCATCCCTAGCGTTGGCGGGCTGGATACCTCGTCGCTACTGCTGGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCG < 2:386064/217‑1 GGGCTGGATACCTCGTCGCTACTGCTGGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGAT‑GTCACCTACGGTTCCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGCCACCCAGAAAATCTTCAGGAACAGCGAGGTGATGCCGATGATCGCCCACATCAGCAGG > 2:757809/1‑182 GCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGAT‑GTCACCTACGGTTCCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGCCACCCAGAAAATCTTCAGGAACAGCGAGGTGATGCCGATGATCGCCCACATCAGCAGGTGCAGGACGTCGCCGAAGGTACCGTAG < 1:757811/182‑1 TGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGCCACCCAGAAAATCTTCAGGAACAGCGAGGTGATGCCGATGATCGCCCACATCAGCAGGTGCAGGACGTCGCCGAAGGTACCGTAGGTGACCATCAGCACA > 1:426973/1‑166 CTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCG > 2:628907/1‑50 CGATCATCGCCACCCAGAAAATCTTCAGGAACAGCGAGGTGATGCCGATGATCGCCCACATCAGCAGGTGCAGGACGTCGCCGAAGGTACCGTAGGTGACCATCAGCACAAAGCCCATCAGCAAGGCCTGGATGACCACCGCCAGCAGTAGCGACGAGGTATCCAGCCC < 1:722390/169‑1 TCGCCACCCAGAAAATCTTCAGGAACAGCGAGGCGATGCCGATGATCGCCCACATCAGCAGGTGCAGGACGTCGCCGAAGGTACCGTAGGTGACCATCAGCACAAAGCCCATCAGCAAGGCCTGGATGACCACCGCCAGCAGTAGCGACGAGGTATCCAGCCCGCCAACGCTAGG > 1:138465/1‑175 GCCACCCAGAAAATCTTCAGGAACAGCGAGGTGATGCCGATGATCGCCCACATCAGCAGGTGCAGGACGTCGCCGAAGGTACCGTAGGTGACCATCAGCACAAAGCCCATCAGCAACGCCTGGATGACCACCGCCAGCAGTAGCGACGAGGTATCCAGCCCGCCAACGCTAGGGATGATCCGGCGGATCGGCTTGAGCAGCGGTTGGGTGGCACGAACGGCGAACTGGCACAGCGG > 1:436672/1‑236 AAGGCCAACTTCTACAACCCGCTGTGCCAGTTCGCCGTTCGTGCCACCCAACCGCTGCTCAAGCCGATCCGCCGGATCATCCCTAGCGTTGGCGGGCTGGATACCTCGTCGCTACTGCTGGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5819657‑5819873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcatcgCCACCCAGAAAATCTTCAGGAACAGCGAGGTGATGCCGATGATCGCCCACATCAGCAGGTGCAGGACGTCGCCGAAGGTACCGTAGGTGACCATCAGCACAAAGCCCATCAGCAAGGCCTGGATGACCACCGCCAGCAGTAGCGACGAGGTATCCAGCCCGCCAACGCTAGGGATGATCCGGCGGATCGGCTTGAGCAGCGGTTGGGTGGCACGAACGGCGAACTGGCACAGCGG < AE015451/5819909‑5819675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |