New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1953934 =	28 (0.640)	3 (0.070)	3/328	NT	10.0%	coding (258/1494 nt)	PP_1752	conserved protein of unknown function
	?	AE015451	1953958 =	27 (0.640)					coding (282/1494 nt)	PP_1752	conserved protein of unknown function

CAGCATCGACAAGGAGGCTTACGACGCCGAGGTACCCGCTTTACGCGAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGAAA  >  AE015451/1953703‑1954168                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           agcgggtcgtccttgagcgatttcagccgtgccttcatctgcttcttggacaggtggaaccagaacttgatgatcagcgcaccttcatcgcacagcatctcctccaggcgttcggcaccggtaatggcctgatcgagcacggcatccttgaacaccccgtgcacccgcccctgcagcatctggctgtaccagttgccaaagaaaacgcccattcgccccttgggcggcaagGcc                                                                                                                                                                                                                                          <  2:760806‑M1/3‑1 (MQ=255)           ccttgagcgatttcagccgtgccttcatctgcttcttggacaggtggaaccagaacttgatgatcagcgcaccttcatcgcacagcatctcctccaggcgttcggcaccggtaatggcctgatcgagcacggcatccttgaacaccccgtgcacccgcccctgcagcatctggctgtaccagttgccaaagaaaacgcccattcgccccttggtcggcaagGCCCGc                                                                                                                                                                                                                                       <  1:483145‑M1/6‑1 (MQ=255)                                           aCGCGAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATgg                                                                                                                                                                                              >  1:622726/1‑236 (MQ=255)                                              cgAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAggg                                                                                                                                                                                                      >  1:720712/1‑225 (MQ=255)                                                         tCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTgg                                                                                                                                                                                 >  1:318254/1‑235 (MQ=255)                                                                ccAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGGCtt                                                                                                                                                                                                                  >  2:77787/1‑195 (MQ=255)                                                                                   cagGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAggg                                                                                                                                                      <  1:328946/236‑1 (MQ=255)                                                                                                     aTCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCGGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGcca                                                                                                                                                                                                                   <  2:647504/157‑2 (MQ=255)                                                                                                           cTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTgg                                                                                                                                                                          >  2:684848/1‑192 (MQ=255)                                                                                                                  aCGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGc                                                                                                                                                                    >  1:676921/1‑191 (MQ=255)                                                                                                                     gCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTc                                                                                                                    <  1:77788/236‑1 (MQ=255)                                                                                                                        ttGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAggg                                                                                                                                                      <  1:407611/199‑1 (MQ=255)                                                                                                                        ttGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCg                                                                                                                   <  1:339564/234‑1 (MQ=255)                                                                                                                                              gaCGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCCTgccgcc                                                                                                                                                                                                            >  2:2655/1‑123 (MQ=255)                                                                                                                                                              aaCGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCt                                                                           <  1:684850/236‑1 (MQ=255)                                                                                                                                                                         ccctgcagcatctggctgtaccagttgccaaagaaaacgcccattcgccccttgggcggcaagGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCAcggggg                                                                                                                                       <  1:482561‑M1/102‑2 (MQ=255)                                                                                                                                                                                       tCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGatc                                                     >  1:773402/1‑233 (MQ=255)                                                                                                                                                                                         gATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCaa                                                <  1:272181/236‑1 (MQ=255)                                                                                                                                                                                            accagttgccaaagaaaacgcccattcgccccttgggcggcaagGCCCGCCTGGCGCTATTGGCGGGGCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGAtg                                                                                                                                                              <  2:804216‑M1/79‑1 (MQ=255)                                                                                                                                                                                              gCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTc                                            >  1:768306/1‑235 (MQ=255)                                                                                                                                                                                                  aCCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGc                                                                                                >  1:616490/1‑179 (MQ=255)                                                                                                                                                                                                  aCCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCCTGCCGCCCCAGGGGc                                                                                                                                                                                                    >  2:238638/1‑79 (MQ=255)                                                                                                                                                                                                   ccTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGa                                                                     <  2:318252/205‑1 (MQ=255)                                                                                                                                                                                                     ttCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTc                                      <  2:671394/234‑1 (MQ=255)                                                                                                                                                                                                           cagcagACCGGCGAAGAGCTGGCCCGCCCGCCCGCATGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGcc                                                                                        <  1:210347/178‑1 (MQ=255)                                                                                                                                                                                                                 aCCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCggcc                                                                                                                                                                                                                     >  2:201616/1‑45 (MQ=255)                                                                                                                                                                                                                 aCCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCaaga                         >  1:524690/1‑235 (MQ=255)                                                                                                                                                                                                                  ccGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCaa                                                <  2:622724/211‑1 (MQ=255)                                                                                                                                                                                                                    gacgaAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGc                                                                                         >  1:290726/1‑168 (MQ=255)                                                                                                                                                                                                                           agCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGAtcatca                                                 <  1:703722/201‑1 (MQ=255)                                                                                                                                                                                                                              tGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCaa                           <  2:773400/220‑1 (MQ=255)                                                                                                                                                                                                                               ggCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCGTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTc                                      <  2:522279/208‑1 (MQ=255)                                                                                                                                                                                                                                gcggcaagGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGt                                                                                                                        <  2:380291‑M1/117‑1 (MQ=255)                                                                                                                                                                                                                                       cgcccgccTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGgaggag                                                                                <  2:530512/158‑1 (MQ=255)                                                                                                                                                                                                                                        GCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCCGATGCTGCAGGGGCGGGTg                                                                                                                                               <  2:361652‑M1/94‑1 (MQ=255)                                                                                                                                                                                                                                        GCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCtg                                                                          <  2:703720‑M1/163‑1 (MQ=255)                                                                                                                                                                                                                                        GCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGaaa  <  1:760808‑M1/235‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           CAGCATCGACAAGGAGGCTTACGACGCCGAGGTACCCGCTTTACGCGAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGAAA  >  AE015451/1953703‑1954168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.