New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1953934 =	28 (0.640)	3 (0.070)	3/328	NT	10.0%	coding (258/1494 nt)	PP_1752	conserved protein of unknown function
	?	AE015451	1953958 =	27 (0.640)					coding (282/1494 nt)	PP_1752	conserved protein of unknown function

ACGCGAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGAAATCGCTCAAGGACGACCCGCT  >  AE015451/1953745‑1954188                                                                                                                                                                                                                      |                                                                                                                                                                                                                                       aCGCGAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATgg                                                                                                                                                                                                                  >  1:622726/1‑236 (MQ=255)    cgAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAggg                                                                                                                                                                                                                          >  1:720712/1‑225 (MQ=255)               tCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTgg                                                                                                                                                                                                     >  1:318254/1‑235 (MQ=255)                      ccAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGGCtt                                                                                                                                                                                                                                      >  2:77787/1‑195 (MQ=255)                                         cagGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAggg                                                                                                                                                                          <  1:328946/236‑1 (MQ=255)                                                           aTCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCGGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGcca                                                                                                                                                                                                                                       <  2:647504/157‑2 (MQ=255)                                                                 cTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTgg                                                                                                                                                                                              >  2:684848/1‑192 (MQ=255)                                                                        aCGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGc                                                                                                                                                                                        >  1:676921/1‑191 (MQ=255)                                                                           gCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTc                                                                                                                                        <  1:77788/236‑1 (MQ=255)                                                                              ttGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAggg                                                                                                                                                                          <  1:407611/199‑1 (MQ=255)                                                                              ttGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCg                                                                                                                                       <  1:339564/234‑1 (MQ=255)                                                                                                 acggcatccttgaacaccccgtgcacccgcccctgcagcatctggctgtaccagttgccaaagaaaacgcccattcgccccttgggcggcaaggcccgccaatagcgccaggcgggcCTTgccgc                                                                                                                                                                                                                                 <  2:380291‑M2/8‑1 (MQ=255)                                                                                                    gaCGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCCTgccgcc                                                                                                                                                                                                                                >  2:2655/1‑123 (MQ=255)                                                                                                                cccccgtgcacccgcccctgcagcatctggctgtaccagttgccaaagaaaacgcccattcgccccttgggcggcaaggcccgccaatagcgccaggcgggcCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAggg                                                                                                                                                                          <  1:482561‑M2/63‑1 (MQ=255)                                                                                                                    aaCGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCt                                                                                               <  1:684850/236‑1 (MQ=255)                                                                                                                               ccctgcagcatctggctgtaccagttgccaaagaaaacgcccattcgccccttgggcggcaagGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCAcggggg                                                                                                                                                           <  1:482561‑M1/102‑2 (MQ=255)                                                                                                                                       catctggctgtaccagttgccaaagaaaacgcccattcgccccttgggcggcaagccccgccaatagcgccaggcgggcCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGt                                                                                                                                                                                             <  2:804216‑M2/44‑1 (MQ=255)                                                                                                                                             tCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGatc                                                                         >  1:773402/1‑233 (MQ=255)                                                                                                                                               gATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCaa                                                                    <  1:272181/236‑1 (MQ=255)                                                                                                                                                  accagttgccaaagaaaacgcccattcgccccttgggcggcaagGCCCGCCTGGCGCTATTGGCGGGGCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGAtg                                                                                                                                                                                  <  2:804216‑M1/79‑1 (MQ=255)                                                                                                                                                    gCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTc                                                                >  1:768306/1‑235 (MQ=255)                                                                                                                                                        aCCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGc                                                                                                                    >  1:616490/1‑179 (MQ=255)                                                                                                                                                        aCCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCCTGCCGCCCCAGGGGc                                                                                                                                                                                                                        >  2:238638/1‑79 (MQ=255)                                                                                                                                                         ccTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGa                                                                                         <  2:318252/205‑1 (MQ=255)                                                                                                                                                           ttCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTc                                                          <  2:671394/234‑1 (MQ=255)                                                                                                                                                                 cagcagACCGGCGAAGAGCTGGCCCGCCCGCCCGCATGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGcc                                                                                                            <  1:210347/178‑1 (MQ=255)                                                                                                                                                                       aCCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCaaga                                             >  1:524690/1‑235 (MQ=255)                                                                                                                                                                        ccGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCaa                                                                    <  2:622724/211‑1 (MQ=255)                                                                                                                                                                          gacgaAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGc                                                                                                             >  1:290726/1‑168 (MQ=255)                                                                                                                                                                                 agCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGAtcatca                                                                     <  1:703722/201‑1 (MQ=255)                                                                                                                                                                                    tGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCaa                                               <  2:773400/220‑1 (MQ=255)                                                                                                                                                                                     ggCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCGTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTc                                                          <  2:522279/208‑1 (MQ=255)                                                                                                                                                                                      gcggcaagGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGt                                                                                                                                            <  2:380291‑M1/117‑1 (MQ=255)                                                                                                                                                                                             cgcccgccTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGgaggag                                                                                                    <  2:530512/158‑1 (MQ=255)                                                                                                                                                                                              GCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCCGATGCTGCAGGGGCGGGTg                                                                                                                                                                   <  2:361652‑M1/94‑1 (MQ=255)                                                                                                                                                                                              GCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCtg                                                                                              <  2:703720‑M1/163‑1 (MQ=255)                                                                                                                                                                                              GCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGaaa                      <  1:760808‑M1/235‑1 (MQ=255)                                                                                                                                                                                                   CCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCa                                                                                                                                                                 >  2:126781‑M1/1‑91 (MQ=255)                                                                                                                                                                                                      ggCGCTATTGGCGGGCCTTGCCGCCCAAAGGGCGGATGGGCGGTTTTTTTTGCAACTGGGACAGcccg                                                                                                                                                                                     >  1:259184/1‑66 (MQ=255)                                                                                                                                                                                                            aTTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGAAATCGCTCAAGgacga        <  1:634835/235‑1 (MQ=255)                                                                                                                                                                                                                gcgggcCTTGCCGACCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGAAATCGCTCAAgg            <  1:483145‑M2/221‑1 (MQ=255)                                                                                                                                                                                                                   ggcCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGAAATCGCTCAAGGACGACCCGCt  <  2:760806‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                      |                                                                                                                                                                                                                                       ACGCGAGGCCCTGCTCGAAGCCCAGTACGAACTCAAGCAGCAGGCGCGTTTTCCGGTGATCGTGCTGATCAACGGCATTGAAGGCGCCGGCAAGGGTGAGACGGTAAAACTGCTCAACGAGTGGATGGACCCGCGCATGATCGATGTGCTCACCTTCGACCAGCAGACCGACGAAGAGCTGGCCCGCCCGCCCGCCTGGCGCTATTGGCGGGCCTTGCCGCCCAAGGGGCGAATGGGCGTTTTCTTTGGCAACTGGTACAGCCAGATGCTGCAGGGGCGGGTGCACGGGGTGTTCAAGGATGCCGTGCTCGATCAGGCCATTACCGGTGCCGAACGCCTGGAGGAGATGCTGTGCGATGAAGGTGCGCTGATCATCAAGTTCTGGTTCCACCTGTCCAAGAAGCAGATGAAGGCACGGCTGAAATCGCTCAAGGACGACCCGCT  >  AE015451/1953745‑1954188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.