New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4703277	30 (0.690)	4 (0.100)	4/324	NT	13.0%	coding (183/2055 nt)	kdpB	K+ transporting ATPase, KdpB subunit
	?	AE015451	= 4703801	25 (0.600)					coding (1363/1695 nt)	kdpA	potassium‑transporting ATPase A chain

GTACCACGTCGTCCTTGCGCAGCGCGCTGGCAGCCACCGTCTCGTAGCTGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGCGATTGGCCCAAGGG  >  AE015451/4703051‑4703509                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                         gTACCACGTCGTCCTTGCGCAGCGCGCTGGCAGCCACCGTCTCGTAGCTGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGc                                                                                                                                                                                                                                 <  1:690269/236‑1 (MQ=255)  tACCACGTCGTCCTTGCGCAGCGCGCTGGCAGCCACCGTCTCGTAGCTGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGc                                                                                                                                                                                                                                 <  1:545964/235‑1 (MQ=255)                        gcgcTGGCCGCCACCGTCTCGTAGCTGCCATCGCGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAg                                                                                                                                                                                                          <  1:122393/236‑1 (MQ=255)                        gcgcTGGCAGCCACCGTCTCGTAGCTGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAac                                                                                                                                                                                                                                      <  2:559773/208‑1 (MQ=255)                                   cACCGTCTCGTAGCTGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCgg                                                                                                                                                                                                              <  1:330430/221‑1 (MQ=255)                                            gTAGCGGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGc                                                                                                                                                                                                                                 <  2:667215/193‑1 (MQ=255)                                                cTGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGa                                                                                                                                                                                  >  1:674998/1‑236 (MQ=255)                                                   ccATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGa                                                                                                                                                                                                                                         >  2:741176/1‑178 (MQ=255)                                                         cGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGaa                                                                                                                                                                                                                                        <  1:647774/173‑1 (MQ=255)                                                                              aGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAg                                                                                                                                                                                 <  1:91393/207‑1 (MQ=255)                                                                                         gCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAg                                                                                                                                                                                                                                  >  2:91392/1‑147 (MQ=255)                                                                                          ccGGCCTGGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGgcgtgag                                                                                                                                                                                                                                   <  1:223240‑M1/145‑8 (MQ=255)                                                                                           gggtcTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCGCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAg                                                                                                                                                                                 <  1:21690/190‑1 (MQ=255)                                                                                            ggCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCa                                                                                                                                      <  1:207754/236‑1 (MQ=255)                                                                                                        gTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGaa                                                                                                                                                                                                                                        <  1:397691/126‑1 (MQ=255)                                                                                                            gcgcGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGTCCACCACCAGCAt                                                                                                                                                                                           >  2:569508/1‑167 (MQ=255)                                                                                                                                     ccAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGcatggtttcagccagttg                                                                                                                                                                                                                        <  2:781009‑M1/113‑19 (MQ=255)                                                                                                                                     ccAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGcatggtttcagccagttg                                                                                                                                                                                                                        >  1:781011‑M1/1‑95 (MQ=255)                                                                                                                                      cAACGCCTCGGCGAAGTTAGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCggg                                                                                                                              >  1:625617/1‑202 (MQ=255)                                                                                                                                           ccTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTg                                                                                                                                           >  1:14491/1‑184 (MQ=255)                                                                                                                                           ccTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTg                                                                                                                                           <  2:14491/184‑1 (MQ=255)                                                                                                                                             gcGGCGAAGGTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACggt                                                                                                                                                                                                                            <  2:11301/100‑1 (MQ=255)                                                                                                                                                                 cacGGTGAACCACAGCCGCAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTg                                                                                             <  1:256261/208‑1 (MQ=255)                                                                                                                                                                    ggTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATg                                                               <  1:699702/235‑1 (MQ=255)                                                                                                                                                                              agccacagGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTGGGCACTGTGCCgg                                                                                 >  1:252277/1‑207 (MQ=255)                                                                                                                                                                              agccacagGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGGCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCAt                                                    >  1:458219/1‑236 (MQ=255)                                                                                                                                                                                 cacagGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGAt                                                 >  1:215093/1‑236 (MQ=255)                                                                                                                                                                                        cAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGcatggtttcagccagttgctgtacgcctatacctcgg                                                                                                                                                                                                     >  2:797716‑M1/1‑44 (MQ=255)                                                                                                                                                                                        cAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGcatggtttcagccagttgctgtacgcctatacctcgg                                                                                                                                                                                                     <  1:797718‑M1/81‑38 (MQ=255)                                                                                                                                                                                           tCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCaa                                       >  1:547640/1‑236 (MQ=255)                                                                                                                                                                                            cTGCACCGCGACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGa                                                                                                              <  1:241998/164‑1 (MQ=255)                                                                                                                                                                                            cTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATg                                                               <  1:169405/211‑1 (MQ=255)                                                                                                                                                                                              gCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCaaa                                      >  2:305733/1‑234 (MQ=255)                                                                                                                                                                                               cACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCt                                                                               <  1:631528/192‑1 (MQ=255)                                                                                                                                                                                                       cGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTa                           >  1:448975/1‑236 (MQ=255)                                                                                                                                                                                                            aTGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCGTGAGCTGACGCGGGTCGAGCTTGACg                                                                                                                                                   >  2:82373/1‑111 (MQ=255)                                                                                                                                                                                                                  aCGCCGCCGCCGGGGGGGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGGCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATg                                                               <  2:743685/189‑1 (MQ=255)                                                                                                                                                                                                                  aCGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGc                <  1:298135/236‑1 (MQ=255)                                                                                                                                                                                                                         cgccgGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGCGATTGGc         <  1:803385/236‑1 (MQ=255)                                                                                                                                                                                                                                ggCGcatggtttcagccagttgctgtacgcctatacctcgggctcggccaacaacggctcggcctttgccgggtttggcgccaacaccgtgtaccacaacctgatgatcggcctggccatgctcatcggccgcttcggctacatcctgccgatactggcgttggccggcagcctggcggcgaaaaaaagcgcgccgctggggcagaacagcttcccgactcacggcccgctgttca  >  1:725326‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                         GTACCACGTCGTCCTTGCGCAGCGCGCTGGCAGCCACCGTCTCGTAGCTGCCATCACGCAGACGACGCTGGGCGGTCAGGCCCTGGCTGCCGGCCTTGAGGCTGTCGGCGCGGGCCTTGCCACGGCCTTCGGCCAACGCCTCGGCGAAGTTGGCGAACAACACGGTGAACCACAGCCACAGGGCAATCTGCACCGCAACGCCGATGCTCACGCCGCCGCCGGGGGCGAAACACAGCACGGTGGTCAGCACCGCGGTCAGGGCCACCACCAGCATTACCGGGGAGCGCTTGAGCTGACGCGGGTCGAGCTTGACGAACGCCTGCACCAGCGCCGGGCGCCACAGCGCGGCGAAGCGGGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGCGATTGGCCCAAGGG  >  AE015451/4703051‑4703509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.