New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4703277	30 (0.690)	4 (0.100)	4/324	NT	13.0%	coding (183/2055 nt)	kdpB	K+ transporting ATPase, KdpB subunit
	?	AE015451	= 4703801	25 (0.600)					coding (1363/1695 nt)	kdpA	potassium‑transporting ATPase A chain

TGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACG  >  AE015451/4703570‑4704027                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                   tGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGcgcc                                                                                                                                                                                                                                >  1:725326‑M2/1‑232 (MQ=255)               tGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGt                                                                                                                                                                                                                     <  2:507885/233‑1 (MQ=255)                                           gcgcgcTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGGACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTggcg                                                                                                                                                                                      >  1:115354/1‑236 (MQ=255)                                                         gccgccAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCTGGGCCGGGCAGGCTGGCGGCGATGgc                                                                                                                                                                              <  1:337189/230‑1 (MQ=255)                                                                                                    cGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACcagc                                                                                                                                            >  2:477440/1‑221 (MQ=255)                                                                                                                                 atcatcAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAGCCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGcttct                                                                                                 <  1:477442/235‑1 (MQ=255)                                                                                                                                      caGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAg                                                                                                                              <  2:522887/201‑1 (MQ=255)                                                                                                                                                 acacGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGaa                                                                                                                            >  1:106258/1‑192 (MQ=255)                                                                                                                                                   acGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCgggg                                                                               <  1:741178/235‑1 (MQ=255)                                                                                                                                                      gtgtTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACg                                                                           >  1:339215/1‑236 (MQ=255)                                                                                                                                                          tGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGc                                                                         >  2:692623/1‑234 (MQ=255)                                                                                                                                                           ggCGCCAACCCCGGCAAAGGCCGAGCCGTTGTTGGCCGCGCCCGAGGTATAGGCGTACAGCACCTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACt                                                                                                                    <  1:82374/190‑1 (MQ=255)                                                                                                                                                            gcgcCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCCCGGGCCTGCAGCTTCTTGCCCAGGTATTCCgt                                                                                 >  1:11318/1‑223 (MQ=255)                                                                                                                                                             cgcCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTAc                                                                            >  1:58651/1‑228 (MQ=255)                                                                                                                                                               ccAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAat                                                                     <  2:609791/233‑1 (MQ=255)                                                                                                                                                                  aaCCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTg                                                                                               <  1:249105/204‑1 (MQ=255)                                                                                                                                                                    cccGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGc                                                                                                                       >  2:714425/1‑178 (MQ=255)                                                                                                                                                                    cccGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACg                                                                           >  1:162358/1‑222 (MQ=255)                                                                                                                                                                                    ccGTGGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACt                                                                                                                    <  1:99566/165‑1 (MQ=255)                                                                                                                                                                                                    ccGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGcgcccccggcggcggcgtgagcatcggcgttgcggtgcagattg                                                                                                                                                                                        <  1:797718‑M2/81‑45 (MQ=255)                                                                                                                                                                                                    ccGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGcgcccccggcggcggcgtgagcatcggcgttgcggtgcagattg                                                                                                                                                                                        >  2:797716‑M2/1‑37 (MQ=255)                                                                                                                                                                                                               gCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGcg                                                                                                    >  2:648530/1‑153 (MQ=255)                                                                                                                                                                                                                     aGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCAAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTGCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAatcatc                                                                 <  1:350065/183‑1 (MQ=255)                                                                                                                                                                                                                       cAACTGGCTGAAACCATGcgcccccggcggcggcgtgagcatcggcgttgcggtgcagattgccctgtggctgtggttcaccgtgttgttcgccaacttcgccgaggcgttgg                                                                                                                                     <  2:781009‑M2/113‑96 (MQ=255)                                                                                                                                                                                                                       cAACTGGCTGAAACCATGcgcccccggcggcggcgtgagcatcggcgttgcggtgcagattgccctgtggctgtggttcaccgtgttgttcgccaacttcgccgaggcgttgg                                                                                                                                     >  1:781011‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                       cAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCg                                                           >  2:611251/1‑187 (MQ=255)                                                                                                                                                                                                                       cAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGCCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACg                                                                           <  1:357295/171‑1 (MQ=255)                                                                                                                                                                                                                            ggCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCggggga                                                                             >  2:90396/1‑162 (MQ=255)                                                                                                                                                                                                                               tGAAACCATGCGCCCCGGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATAGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGAcg  <  1:758917/236‑1 (MQ=255)                                                                                                                                                                                                                               tGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGGACGGCCAATCATCAGCCCGGCCAGGAGCACCGCGATAAGGa                                     >  1:181096/1‑201 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                   TGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACG  >  AE015451/4703570‑4704027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.