New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4845609	33 (0.760)	3 (0.070)	3/326	NT	8.6%	coding (359/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	AE015451	4846279 =	32 (0.770)					coding (1029/2475 nt)	PP_4261	cation‑transporting P‑type ATPase

AACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCGATGATGGCG  >  AE015451/4845408‑4845832                                                                                                                                                                                                          |                                                                                                                                                                                                                                aaCACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCAc                                                                                                                                                                                               >  1:406945/1‑236 (MQ=255)    acCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGc                                                                                                                                                                                            <  1:753283/236‑1 (MQ=255)     ccGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGCAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCCATCACCGc                                                                                                                                                                                            >  1:97299/1‑235 (MQ=255)     ccGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAg                                                                                                                                                                                                                      >  1:416254/1‑209 (MQ=255)      cGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAg                                                                                                                                                                                                                      >  2:662132/1‑208 (MQ=255)       gCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctg                                                                                                                                                                                         <  1:662134/236‑1 (MQ=255)               aacaGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTg                                                                                                                                                                                                              <  2:784839/207‑1 (MQ=255)                             cGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAagc                                                                                                                                                                   <  1:49213/236‑1 (MQ=255)                                        ccAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTg                                                                                                                                                        >  1:63042/1‑236 (MQ=255)                                         cAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCCCCGCCTGCTGCTGAACTGGGa                                                                                                                                                                           >  2:602343/1‑216 (MQ=255)                                         cAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgctgctg                                                                                                                                                                                   >  2:289169/1‑208 (MQ=255)                                                   cAGGACGAACTGGCCCTGTACGCCCGCAGCGACGTGCAGCAACCCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcga                                                                                                                                                         <  1:161832‑M1/224‑73 (MQ=255)                                                         gAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGc                                                                                                                                                                                                                           >  2:647899/1‑152 (MQ=255)                                                         gAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAAcc                                                                                                                                                                                                          >  1:33240/1‑169 (MQ=255)                                                                                  aCGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCt                                                                                                                                                         >  2:24860/1‑193 (MQ=255)                                                                                          caAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTa                                                                                                      >  1:524981/1‑236 (MQ=255)                                                                                           caaCCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCt                                                                                                                      <  1:624854/218‑1 (MQ=255)                                                                                            acccTGCGTCCGCCACCAGGGTGAGCTGGCCGAAACCCCCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCCGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCAcc                                                                                                                                                                                              <  2:109253/144‑1 (MQ=255)                                                                                                ttCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGc                                                                                                 >  1:463925/1‑235 (MQ=255)                                                                                                       gCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCg                                                                                                                                                                                                                         >  2:549241/1‑108 (MQ=255)                                                                                                       gCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCg                                                                                                                                                                                                                         <  1:549243/108‑1 (MQ=255)                                                                                                            caGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGgccg                                                                                     <  1:738224/235‑1 (MQ=255)                                                                                                                      tGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATc                                                                                                                          >  1:800441/1‑188 (MQ=255)                                                                                                                      tGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTg                                                                          >  1:576688/1‑236 (MQ=255)                                                                                                                      tGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCCGCTGCTGac                                                                                                                                                                                 >  2:215994/1‑132 (MQ=255)                                                                                                                       ggCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAAtt                                                                           <  2:406943/234‑1 (MQ=255)                                                                                                                                        ttgTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCATCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCGAtt                                                                           <  2:419551/217‑1 (MQ=255)                                                                                                                                          gTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcgagtatctgccgcaaccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagcgcgctgaatgtggaagtggaagccctcggccatga                                                      >  1:286747‑M1/1‑65 (MQ=255)                                                                                                                                                              cgccTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAAcc                                                             <  2:63041/209‑1 (MQ=255)                                                                                                                                                                 cTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCg                               <  1:289171/236‑1 (MQ=255)                                                                                                                                                                            tgATCGAAAAGCACCTGCGCAACCTGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcgagtatctgccgcaaccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagcgcgctgaatgtggaagtggaagccctcggccatgactcacgcttgtcggccatcgtccgcctgctgg                      <  2:286745‑M1/234‑204 (MQ=255)                                                                                                                                                                                 gAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGa                                                                  >  2:513002/1‑185 (MQ=255)                                                                                                                                                                                 gAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGtt                  <  2:576686/233‑1 (MQ=255)                                                                                                                                                                                        aCCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCgatg        <  1:711520/236‑1 (MQ=255)                                                                                                                                                                                              gcAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCGATGATGGCg  <  1:24860/236‑1 (MQ=255)                                                                                                                                                                                                    tGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgccgaatcgctgctgaccggcgagtatctgccgcaaccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagcgcgctgaatgtggaagtggaagccctcggccatgactcacgcttgtcggccatcgtccgcctgctg                       <  1:210362‑M1/209‑203 (MQ=255)                                                                                                                                                                                                     gCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCgat         >  2:489368/1‑222 (MQ=255)                                                                                                                                                                                                        cGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgct                                                                                                                                                                     >  2:135994‑M1/1‑3 (MQ=255)                                                                                                                                                                                                          |                                                                                                                                                                                                                                AACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCGATGATGGCG  >  AE015451/4845408‑4845832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.