New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4845609	33 (0.760)	3 (0.070)	3/326	NT	8.6%	coding (359/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	AE015451	4846279 =	32 (0.770)					coding (1029/2475 nt)	PP_4261	cation‑transporting P‑type ATPase

CGGCGAGCTTTATTTCGACACGGTGGGCATGTTCGCCCTGTTCCTGCTGACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATGTGGAAGTGGAAGCCCTCGGCCATGACTCACGCTTGTCGGCCATCGTCCGCCTGCTGG  >  AE015451/4846063‑4846481                                                                                                                                                                                                                         |                                                                                                                                                                                                           cggcgAGCTTTATTTCGACACGGTGGGCATGTTCGCCCTGTTCCTGCTGACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACg                                                                                                                                                                                         >  1:681719/1‑236 (MQ=255)  ggcgAGCTTTATTTCGACACGGTGGGCATGTTCGCCCTGTTCCTGCTGACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACgg                                                                                                                                                                                        <  1:482670/236‑1 (MQ=255)  ggcgAGCTTTATTTCGACACGGTGGGCATGTTCGCCCTGTTCCTGCTGACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACg                                                                                                                                                                                         <  1:367217/235‑1 (MQ=255)    cgAGCTTTATTTCGACACGGTGGGCATGTTCGCCCTGTTCCTGCTGACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGgc                                                                                                                                                                                      <  1:527216/236‑1 (MQ=255)      accTTTATTTCGACACGGTGGGCATGTTCGCCCTGTTCCTGCTGACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGgc                                                                                                                                                                                                            <  2:355162/210‑1 (MQ=255)                                            ctgctgACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCAtcgtc                                                                                                                                                                              >  2:483762/1‑204 (MQ=255)                                                  aCCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCAGCGGGCGCAGCGAACGCCTCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGCCATCCCTGCCGACGGGCGCATCGTCGCGGGCCg                                                                                                                                                                      >  2:7808/1‑206 (MQ=255)                                                    cGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCAtcgt                                                                                                                                                                               >  1:605576/1‑195 (MQ=255)                                                        cGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCAGTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTc                                                                                                                                                                   <  1:215996/203‑1 (MQ=255)                                                                 caggacgaactggccctgtacgcccgcagcgacgtgcagcaacccttcgtccgccaccagggtgagctggccgaaaccaccttgcttgtcgagggcatcagctgcgccgcctgcggctggctgatcgaaaagcacctgcgcaacctgcccggCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGa                                                                                                                                     <  1:161832‑M2/72‑1 (MQ=255)                                                                         cgccCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGATGCCCGTCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGc                                                                                                                  >  1:783958/1‑235 (MQ=255)                                                                          gccCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGgc                                                                                                                                                                                      >  1:481149/1‑166 (MQ=255)                                                                          gccCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGgc                                                                                                                                                                                      <  2:481147/166‑1 (MQ=255)                                                                                    gcACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCgggtgggt                                                                                                         <  1:633454/233‑1 (MQ=255)                                                                                                ccACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGgcgc                                                                                                                                                                                    >  2:139077/1‑146 (MQ=255)                                                                                                         aGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCg                                                                                                                           <  1:606117/194‑1 (MQ=255)                                                                                                              gTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGa                                                                                                                                                                            >  2:700666/1‑140 (MQ=255)                                                                                                                 aaCCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCAt                                                                                                                                                                                  >  2:318907/1‑131 (MQ=255)                                                                                                                      gctgcCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCcgcg                                                                                                                                                              >  2:199958/1‑146 (MQ=255)                                                                                                                           cAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGGATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCgg                                                                                        >  2:303149/1‑211 (MQ=255)                                                                                                                                 cATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGCCGCGGTCATCCCTGCCGACGGGCGCAtcgtcc                                                                                                                                                                             >  2:180984/1‑119 (MQ=255)                                                                                                                                            cTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTg                                                                                            >  2:789354/1‑190 (MQ=255)                                                                                                                                                        gtcgagggcatcagctgcgccgcctgcggctggctgatcgaaaagcacctgcgcaacctgcccggCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATGTGGAAGTGGAAGCCCTCGGCCATGa                                  >  1:286747‑M2/66‑236 (MQ=255)                                                                                                                                                         ggCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATgtggaagtgg                                                  >  1:418255/1‑219 (MQ=255)                                                                                                                                                                 gAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTAGGCTGAACGTTGa                                                                         >  2:412478/1‑188 (MQ=255)                                                                                                                                                                  aaCGCAGCCTGCTCAGCGAGGTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCATGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACg                                                                                                                   <  2:254880/145‑1 (MQ=255)                                                                                                                                                                   aCGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAg                                                                                                                                    >  2:110333/1‑127 (MQ=255)                                                                                                                                                                   aCGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAg                                                                                                                                    <  1:110334/127‑1 (MQ=255)                                                                                                                                                                       aTCCTGCTCAGCGAGTTACAGGGCGGCGGCACCGTGCCGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCAc                                                                                              <  2:10199/161‑1 (MQ=255)                                                                                                                                                                            gCTCAGCGAGTTCCAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACg                                                                                    <  2:166776/166‑1 (MQ=255)                                                                                                                                                                                     gTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATgtggaagt                                                    <  1:188752/189‑1 (MQ=255)                                                                                                                                                                                       tccAGGGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATGTGGAAGTGGAAGCCCTCGGCCATGACTCACGCTTGTCGGCCATCGTCCGCctgctg   <  1:177987/234‑1 (MQ=255)                                                                                                                                                                                          tgatcgaaaagcacctgcgcaacctgcccggCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATGTGGAAGTGGAAGCCCTCGGCCATGACTCACGCTTGTCGGCCATCGTCCGCCTGCTgg  <  2:286745‑M2/203‑1 (MQ=255)                                                                                                                                                                                              cggcgACCCCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGaa                                                                               <  2:117677/153‑1 (MQ=255)                                                                                                                                                                                               ggcgACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCgggtgggt                                                                                                         >  2:475082/1‑126 (MQ=255)                                                                                                                                                                                                         tGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGc                                                                                                                                                                     >  2:266280/1‑56 (MQ=255)                                                                                                                                                                                                                  tgcccggCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGCCGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATGTGGAAGTGGAAGCCCTCGGCCATGACTCACGCTTGTCGGCCATCGTCCGCctgctg   <  1:210362‑M2/202‑1 (MQ=255)                                                                                                                                                                                                                      cggCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCgct                                                                                                                                                 >  2:135994‑M2/4‑63 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                           CGGCGAGCTTTATTTCGACACGGTGGGCATGTTCGCCCTGTTCCTGCTGACCGGCCGCTACCTGGAGCGCCGCGCCCGCGAGCGCACAGCGGCGGCCACTGCACAGCTGGTCAACCTGCTGCCAGCCTCATGCCTGCGCCTGGACGCCATCGGGCGCAGCGAACGCATCCTGCTCAGCGAGTTACAGTGCGGCGACACCGTGCAGGTGCTGCCCGGCGCGGTCATCCCTGCCGACGGGCGCATCGTCGAGGGCCGCTCCAGCGTCGACGAATCGCTGCTGACCGGCGAGTATCTGCCGCAACCACGCCGGGTGGGTGAGCGGGTCACTGGCGGTACGCTGAACGTTGAAAGCGCGCTGAATGTGGAAGTGGAAGCCCTCGGCCATGACTCACGCTTGTCGGCCATCGTCCGCCTGCTGG  >  AE015451/4846063‑4846481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.