New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5813390 =	33 (0.760)	3 (0.070)	3/324	NT	10.3%	coding (311/1737 nt)	argS	arginyl‑tRNA synthetase
	?	AE015451	5813490 =	21 (0.510)					coding (411/1737 nt)	argS	arginyl‑tRNA synthetase

CGCCGGCGATCCAGGTGGAAAACGCCCGGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGC  >  AE015451/5813159‑5813614                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                 cGCCGGCGATCCAGGTGGAAAACGCCCGGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTgcc                                                                                                                                                                                                                               >  1:278999/1‑233 (MQ=255)    cGGCGATCCAGGTGGAAAACGCCCGGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGa                                                                                                                                                                                                                            <  1:760015/235‑1 (MQ=255)             aGGTGGAAAACGCCCGGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTg                                                                                                                                                                                                                  >  1:354781/1‑236 (MQ=255)                              gACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGccg                                                                                                                                                                                                  <  1:491613/235‑1 (MQ=255)                                           gCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCaaa                                                                                                                                                                                      >  2:752494/1‑234 (MQ=255)                                                     cAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTggg                                                                                                                                                                                                                >  1:311164/1‑198 (MQ=255)                                                          aCATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACAt                                                                                                                                                                      <  1:651291/235‑1 (MQ=255)                                                           cATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACa                                                                                                                                                                       <  2:720124/233‑1 (MQ=255)                                                                ccATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGgcgc                                                                                                                                                                                         <  1:626491/210‑1 (MQ=255)                                                                                gccggccgGCATGACGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACa                                                                                                                                                                       <  2:604352/212‑1 (MQ=255)                                                                                   ggccggcATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCa                                                                                                                                                                                                        >  2:427440/1‑176 (MQ=255)                                                                                   ggccggcATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAg                                                                                                                                                                                    >  1:806357/1‑196 (MQ=255)                                                                                    gtcgctggtgatcgggttttcctgcaggtaggccatcagcatgccgaactgggtaccccagtcgccgacgtggttctggcggatgacgttgtcgcccaggaactccagcacgcgcgcaacgctgtcaccgatgatggtcgagcgcaggTGGCCGa                                                                                                                                                                                                                            <  1:136249‑M1/7‑1 (MQ=255)                                                                                       ggcATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAgggg                                                                                                                                                                                 >  1:234243/1‑193 (MQ=255)                                                                                        gcATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCAc                                                                                                                                       >  1:203632/1‑236 (MQ=255)                                                                                             aaGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGgcg                                                                                                                                                                                          >  1:592615/1‑180 (MQ=255)                                                                                                     cgACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTg                                                                                                                           <  1:671509/235‑1 (MQ=255)                                                                                                          tCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGa                                                                                                                                                                                                                            <  2:593026/133‑1 (MQ=255)                                                                                                                                     tgggtaccccagtcgccgacgtggttctggcggatgacgttgtcgcccaggaactccagcacgcgcgcaacgctgtcaccgatgatggtcgagcgcaggTGGccgcc                                                                                                                                                                                                                           <  2:98699‑M1/8‑3 (MQ=255)                                                                                                                                     cGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACCCCGACGCCCTGGCCCACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCACAGCCGGCCCGGCGCaa                                                                                                                                                                                       >  2:194392/1‑143 (MQ=255)                                                                                                                                               cGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCgg                                                                                                                                                                 <  2:529319/155‑1 (MQ=255)                                                                                                                                               cGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCt                                                                                                                                                       <  2:806098/165‑1 (MQ=255)                                                                                                                                               cGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCt                                                                                                                                                       >  1:806100/1‑165 (MQ=255)                                                                                                                                                     cAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTgc                                                                                                                          <  1:608532/188‑1 (MQ=255)                                                                                                                                                              tctggcggatgacgttgtcgcccaggaactccagcacgcgcgcaacgctgtcaccgatgatggtcgagcgcaggAGGCAGACGCCCACCCGGGTgcgcgc                                                                                                                                                                                                         <  1:96856‑M1/26‑1 (MQ=255)                                                                                                                                                                agaTTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCACGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCt                                                                                     >  1:101278/1‑214 (MQ=255)                                                                                                                                                                     gCAGGCCCCGGCTTCCGCAACTGCTTCCAGAACCCCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGccggcccggc                                                                                                                                                                                           <  2:180448/107‑1 (MQ=255)                                                                                                                                                                              ggCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGCCGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCACGGCAATGCACGTCGGCCACATgcg                                                                                                                         >  2:219796/1‑164 (MQ=255)                                                                                                                                                                                 ttCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTAGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGt                                              >  1:691137/1‑236 (MQ=255)                                                                                                                                                                                               ccAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATc                                                            <  2:575254/208‑1 (MQ=255)                                                                                                                                                                                                   aaCACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTgg                                                                                   <  1:711479/181‑1 (MQ=255)                                                                                                                                                                                                      acCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGtt                         >  1:697748/1‑236 (MQ=255)                                                                                                                                                                                                       gcaacgctgtcaccgatgatggtcgagcgcaggTAGCCGACGCCCACCTGCGTGCGCGCAAAGCCTGCCCGGCGCAAAAGGTGGTGATCGACATGTCGCCACACAACATGGCCAAGGAAATGCACGt                                                                                                                                     <  2:449709‑M1/94‑1 (MQ=255)                                                                                                                                                                                                        caacgctgtcaccgatgatggtcgagcgcaggTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGCGGTGATCGACATGTCGGCACCCAACCCGGCCAAGGAAATGCACg                                                                                                                                      <  1:158293‑M1/93‑1 (MQ=255)                                                                                                                                                                                                                    cacccGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATg            <  1:255668/232‑1 (MQ=255)                                                                                                                                                                                                                    cAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGCGCGCGCAAAGCCGGCCCGGCGCAAAAggc                                                                                                                                                                                  >  1:212292/1‑68 (MQ=255)                                                                                                                                                                                                                         gCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTAc      <  1:752496/236‑1 (MQ=255)                                                                                                                                                                                                                          ccTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTc                                                                                                                      >  2:47941/1‑123 (MQ=255)                                                                                                                                                                                                                                  ccgccCTGGCCGACGCCCACCGGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGc  <  1:676106/231‑1 (MQ=255)                                                                                                                                                                                                                                   cgccCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAGGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACg                                                                 <  2:86631/167‑1 (MQ=255)                                                                                                                                                                                                                                     aggTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGc                                          <  1:245742‑M1/185‑1 (MQ=255)                                                                                                                                                                                                                                        TGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGc                                          <  1:541914‑M1/185‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                 CGCCGGCGATCCAGGTGGAAAACGCCCGGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCATGAAGCCGCGCGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGC  >  AE015451/5813159‑5813614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.