New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5813390 =	33 (0.760)	3 (0.070)	3/324	NT	10.3%	coding (311/1737 nt)	argS	arginyl‑tRNA synthetase
	?	AE015451	5813490 =	21 (0.510)					coding (411/1737 nt)	argS	arginyl‑tRNA synthetase

CGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTGGAAAACTTCTACCGCGCGGCGAAGAAACGCTTCGAT  >  AE015451/5813259‑5813688                                                                                                                                                                                                                                        |                                                                                                                                                                                                       cgACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTg                                                                                                                                                                                                     <  1:671509/235‑1 (MQ=255)                                               gccgacgtggttctggcggatgacgttgtcgcccaggaactccagcacgcgcgcaacgctgtcaccgatgatggtcgagcgcaggtggccgacgtgcatttccttggccaggttgggtgccgacatgtcgatcaccaccttttgcgccgggccggctttgcgcgcacccaggtgggcgtcggccaCCt                                                                                                                                                                                                      <  1:245742‑M2/3‑1 (MQ=255)                                                 cAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTgc                                                                                                                                                                                                    <  1:608532/188‑1 (MQ=255)                                                            agaTTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCACGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCt                                                                                                                                                               >  1:101278/1‑214 (MQ=255)                                                                          ggCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGCCGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCACGGCAATGCACGTCGGCCACATgcg                                                                                                                                                                                                   >  2:219796/1‑164 (MQ=255)                                                                             ttCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTAGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGt                                                                                                                        >  1:691137/1‑236 (MQ=255)                                                                                           ccAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATc                                                                                                                                      <  2:575254/208‑1 (MQ=255)                                                                                               aaCACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTgg                                                                                                                                                             <  1:711479/181‑1 (MQ=255)                                                                                                  acCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGtt                                                                                                   >  1:697748/1‑236 (MQ=255)                                                                                                                cacccGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATg                                                                                      <  1:255668/232‑1 (MQ=255)                                                                                                                     gCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTAc                                                                                <  1:752496/236‑1 (MQ=255)                                                                                                                      ccTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTc                                                                                                                                                                                                >  2:47941/1‑123 (MQ=255)                                                                                                                              ccgccCTGGCCGACGCCCACCGGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGc                                                                            <  1:676106/231‑1 (MQ=255)                                                                                                                               cgccCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAGGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACg                                                                                                                                           <  2:86631/167‑1 (MQ=255)                                                                                                                                 aggTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGc                                                                                                                    <  1:245742‑M1/185‑1 (MQ=255)                                                                                                                                    TGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGc                                                                                                                    <  1:541914‑M1/185‑1 (MQ=255)                                                                                                                                          acgtgcatttccttggccatgttgtgtggcgacatgtcgatcaccaccttttgcgccgggcaggctttgcgcgcacgcaggtgggcgtcggctaCCTGCGCTCGACCATCATCGGTGACAGCGTTgc                                                                                                                                                                        <  2:449709‑M2/33‑1 (MQ=255)                                                                                                                                           cgtgcatttccttggccgggttgggtgccgacatgtcgatcaccgccttttgcgccgggccggctttgcgcgcacccaggtgggcgtcggccaCCTGCGCTCGACCATCATCGGTGACAGCGTTg                                                                                                                                                                         <  1:158293‑M2/32‑1 (MQ=255)                                                                                                                                                      gTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGCTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTg                                               <  1:438055/236‑1 (MQ=255)                                                                                                                                                        gcgcgcAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGt                                              >  1:730860/1‑235 (MQ=255)                                                                                                                                                             cAAAGCCGGCCCGGCGTAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCgg                                                                                                                     <  2:806355/159‑1 (MQ=255)                                                                                                                                                              aaaGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCt                                       >  2:678740/1‑236 (MQ=255)                                                                                                                                                                               aaaGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCCGCGACGAGc                                                 >  1:695024/1‑209 (MQ=255)                                                                                                                                                                               aaaGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGGCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCgg                                                                                                                     <  2:176872/141‑1 (MQ=255)                                                                                                                                                                                      gtgATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTGGAAAACTTCTACCGCGCGGCgaa               <  1:665364/236‑1 (MQ=255)                                                                                                                                                                                        gATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTGGAAAACTTCTACCGCGCGGCgaaga             >  1:639727/1‑236 (MQ=255)                                                                                                                                                                                                   cGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTGGAAAACTTCTACCGCGCGGCga                <  1:113668/222‑1 (MQ=255)                                                                                                                                                                                                      cACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGc                                                        >  1:181045/1‑179 (MQ=255)                                                                                                                                                                                                              gcgcgcacccgggtgggcgtctgcctCCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGa                                                                                                                               <  1:96856‑M2/74‑1 (MQ=255)                                                                                                                                                                                                                              aCGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTg                                      <  2:362078/173‑1 (MQ=255)                                                                                                                                                                                                                              aCGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTg                                      >  1:362080/1‑173 (MQ=255)                                                                                                                                                                                                                              aCGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTGGAAAACTTCGACCGCGCGGCGAAGAAACGCTTCGAt  >  1:72772/1‑209 (MQ=255)                                                                                                                                                                                                                                ggcggccaCCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCa                                                                                                      <  2:98699‑M2/99‑1 (MQ=255)                                                                                                                                                                                                                                 tcggccaCCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGcgac                                                     <  1:136249‑M2/148‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                       CGACCTCGCCGAAAAACTGATCAACGCCCTGCCGGCCAGCGCCGACATCAGCAAGGTCGAGATTGCAGGCCCCGGCTTCCTCAACTTCTTCCAGAACACCGACGCCCTGGCCAACCGCCTGGATGCCGCCCTGGCCGACGCCCACCTGGGTGCGCGCAAAGCCGGCCCGGCGCAAAAGGTGGTGATCGACATGTCGGCACCCAACCTGGCCAAGGAAATGCACGTCGGCCACCTGCGCTCGACCATCATCGGTGACAGCGTTGCGCGCGTGCTGGAGTTCCTGGGCGACAACGTCATCCGCCAGAACCACGTCGGCGACTGGGGTACCCAGTTCGGCATGCTGATGGCCTACCTGCAGGAAAACCCGATCACCAGCGACGAGCTGTCGGACCTGGAAAACTTCTACCGCGCGGCGAAGAAACGCTTCGAT  >  AE015451/5813259‑5813688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.