New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2867848 =	37 (0.850)	3 (0.070)	3/322	NT	8.1%	intergenic (‑1072/‑497)	glllA/PP_2520	gallate dioxygenase/conserved protein of unknown function
	?	AE015451	2867914 =	33 (0.800)					intergenic (‑1138/‑431)	glllA/PP_2520	gallate dioxygenase/conserved protein of unknown function

GAACATGATGGTGATCATCAGCGAGCGGTTGCGTGTGGGCAGGTATTCGGCAAGCAGGGTGGTGCAGTTGGGCATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCACTGGTAGGCAGCAATGGGGCGGTTATCGATCCAGTCTTTGACATCGATGGGGGCATCGACAGGAG  >  AE015451/2867678‑2868138                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                 gAACATGATGGTGATCATCAGCGAGCGGTTGCGTGTGGGCAGGTATTCGGCAAGCAGGGTGGTGCAGTTGGGCATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCT‑AGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAgcgc                                                                                                                                                                                                                                  <  1:318680/236‑1 (MQ=255)                      cgagcgGTTGCGTGTGGGCAGGTATTCGGCAAGCAGGGTGGTGCAGTTGGGCATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGAt                                                                                                                                                                                                                            >  1:252240/1‑222 (MQ=255)                                             aTTCGGCAAGCAGGGTGGTGCAGTTGGGCATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCa                                                                                                                                                                                       >  1:394560/1‑236 (MQ=255)                                                              gtgCAGTTGGGCATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACtcat                                                                                                                                                                                                 <  2:570900/209‑1 (MQ=255)                                                                       ggCATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAgg                                                                                                                                                                     <  2:338048/228‑1 (MQ=255)                                                                         cATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCa                                                                                                                                                                >  1:329266/1‑231 (MQ=255)                                                                            ggCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCa                                                                                                                                                        >  1:429262/1‑236 (MQ=255)                                                                               cGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACtcat                                                                                                                                                                                                 <  2:791120/192‑1 (MQ=255)                                                                                                 ggTCAGCGGCCGTACCACAGCCAGCGCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAggcg                                                                                                                                                                                 <  1:132503/190‑1 (MQ=255)                                                                                                     agcagcCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCa                                                                                                                                >  1:794383/1‑235 (MQ=255)                                                                                                       cagcCGTAACACAGCCGGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGc                                                                                                                                                                                                                         <  2:118055/144‑1 (MQ=255)                                                                                                               acacAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGc                                                                                                                         >  1:642066/1‑232 (MQ=255)                                                                                                                 acaGCCAGCGCATAGGGGGTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTGTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCa                                                                                                                                                                                                                        <  2:29967/135‑1 (MQ=255)                                                                                                                       agcTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCg                                                                                                                                                  >  1:464372/1‑199 (MQ=255)                                                                                                                       agcTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAgg                                                                                                                                              >  1:560020/1‑203 (MQ=255)                                                                                                                                      cGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGAt                                                                                              >  1:630162/1‑236 (MQ=255)                                                                                                                                      cGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCCGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGGCATCGaa                                                                                                       >  1:342450/1‑227 (MQ=255)                                                                                                                                         gCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGgcgcgag                                                                                                                                                                          >  1:449226/1‑155 (MQ=255)                                                                                                                                         gCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGcgcgcg                                                                                                                                                                          <  2:449224/157‑1 (MQ=255)                                                                                                                                         gCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACAt                                                                                                                    <  2:795365/211‑1 (MQ=255)                                                                                                                                         gCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACAt                                                                                                                    >  1:795367/1‑211 (MQ=255)                                                                                                                                           gAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCa                                                                                                  >  2:751036/1‑227 (MQ=255)                                                                                                                                                      ccaggcTCAGCAGGCTTAAACCGCTGACCGCGATCAGCAGCACTTTCCTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACtcat                                                                                                                                                                                                 <  2:356669/121‑1 (MQ=255)                                                                                                                                                               gcagGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATc                                                                        <  2:794381/233‑1 (MQ=255)                                                                                                                                                                  ggCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACACCACCAGGATCAGCCAc                                                                  >  1:83047/1‑236 (MQ=255)                                                                                                                                                                  ggCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCAGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCAc                                                                  >  1:451522/1‑236 (MQ=255)                                                                                                                                                                                  CGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCACTGGTAGGCAGCAATg                                                   >  1:406282‑M1/1‑235 (MQ=255)                                                                                                                                                                                    CGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATc                                                                        >  2:394558‑M1/1‑212 (MQ=255)                                                                                                                                                                                     gATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAggcg                                                                                                                                                                                 <  1:95157/106‑1 (MQ=255)                                                                                                                                                                                            agcaCTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAagcacag                                                                                  <  2:495137/194‑1 (MQ=255)                                                                                                                                                                                               aCTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGGACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCACTGGTAGgcagc                                                       >  1:274015/1‑218 (MQ=255)                                                                                                                                                                                                 tttCTTGCGGCCCAGCCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATg                                                                                                                                                                                                                           <  2:151593/52‑1 (MQ=255)                                                                                                                                                                                                 cgaccggttgggccgcaagaaagtgctgctgatcgcggtcagccCGCCGATGGCAAGGcc                                                                                                                                                                                                                   <  1:561436‑M2/16‑1 (MQ=255)                                                                                                                                                                                                        cGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAagcacag                                                                                  >  1:382646/1‑182 (MQ=255)                                                                                                                                                                                                        cGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAagcacag                                                                                  <  2:382644/182‑1 (MQ=255)                                                                                                                                                                                                         ggCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCACTGGTAGGCAGCAATGGGGCGGTTATCGATCCAGTCTTTg                           >  1:757136/1‑236 (MQ=255)                                                                                                                                                                                                           cccAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCACTGGTAGGCAGCAATGGGGCGGTTATCGATCCAGTCTTTGAc                         >  1:600486/1‑236 (MQ=255)                                                                                                                                                                                                                caagaaagtgctgctgatcgcggtcagcgCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAgg                                                                                                                                                                     >  2:697900‑M2/30‑91 (MQ=255)                                                                                                                                                                                                                caagaaagtgctgctgatcgcggtcagcgCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAgg                                                                                                                                                                     <  1:697902‑M2/62‑1 (MQ=255)                                                                                                                                                                                                                                     ggtcagcgCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCACTGGTAGGCAGCAATGGGGCGGTTATCGATCCAGTCTTTGACATCGATGGGGGCATCGACaggag  >  2:416390‑M2/9‑233 (MQ=255)                                                                                                                                                                                                                                             cgcCGATGGCAAGGCCGACCATGCCGGCACGCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAag                                                                                       <  2:140907/140‑1 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                 GAACATGATGGTGATCATCAGCGAGCGGTTGCGTGTGGGCAGGTATTCGGCAAGCAGGGTGGTGCAGTTGGGCATGGCCGCACCCAGGGCAATGCCGGTCAGCAGCCGTAACACAGCCAGCTCATAGGGGTTGCGGGCGAAGGCGCAGGCCAGGCTCAGCAGGCTGAAACCGCTGACCGCGATCAGCAGCACTTTCTTGCGGCCCAACCGGTCGGCGTACGGGCCGGCGGTCAGCGCGCCGATGGCAAGGCCGACCATGCCGGCACTCATCACCGGGCCAAAGGCGGCGCGCGACAGGCCCCAGTCCTGCATCAGCGAAGGCGCGATGAAACCCATGACGGCGACATCGAAGCCATCGAACAGCACGATCAGGAAGCACAGCACCAGGATCAGCCACTGGTAGGCAGCAATGGGGCGGTTATCGATCCAGTCTTTGACATCGATGGGGGCATCGACAGGAG  >  AE015451/2867678‑2868138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.