New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1045952	10 (0.390)	5 (0.200)	5/302	NT	29.9%	coding (2426/3045 nt)	PP_0906	putative Multidrug efflux RND transporter
	?	AE015451	= 1046016	14 (0.570)					coding (2362/3045 nt)	PP_0906	putative Multidrug efflux RND transporter

CACTGTCACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1045744‑1045952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcccaCGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGGGCGTGCCCATGGTCAGCCTGGGCGAGGCGCTCAAGACCGTGCAGGACATCGCTCGCGAAGAGGCCCCGGAAGGCTTTGCCTTCGACTACGCCGGCGCGGCCCGCCAGTATGTACAGGAAGGCAGCGCATTGTGGGTCACCTTCGGCCTGGCGCTGGCGATCATTTTCCTCGTACTGGCTGCACA  <  AE015451/1046016‑1045787                                                                                                                                                                                                                                                                                                                                                                                                                                                         CACTGTCACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGCGCGCCTCG                                                                                                                                                                                                                                            >  1:502432/1‑205        ACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCC                                                                                                                                                                                                                                         <  2:255503/201‑1                                                                                                                                                                        CTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCACGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGGGCGT                                                                                                                                                                                      >  1:58536/1‑92                                                                                                                                                                        CTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCACGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGGGCGT                                                                                                                                                                                      <  2:58533/92‑1                                                                                                                                                                                    TGTCCTGCACGGTCTTGAGCGCCTCGCCCACGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGGGCGTGCCCATGGTCAGCCT‑GGCGAGGCGCTCAAGACCGTGCAGGACATCGCTCGCGAAGAGGCCCCGGAAGGCTTTGCCTTCGACTACGCCGGCGCGGCC                                                                                     <  1:186826/176‑1                                                                                                                                                                                    TGTCCTGCACGGTCTTGAGCGCCTCGCCCACGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGGGCGTGCCCATGGTCAGCCT‑GGCGAGGCGCTCAAGACCGTGCAGGACATCGCTCGCGAAGAGGCCCCGGAAGGCTTTGCCTTCGACTACGCCGGCGCGGCC                                                                                     >  2:186822/1‑176                                                                                                                                                                                                 CTTGAGCGCCTCGCCCACGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGCGCGTGCCCATGGTCAGCCTGGGCGAGGCGCTCAAGACCGTGCAGGACATCGCTCGCGAAGAGGCCCCGGAAGGCTTTGCCTTCGACTA                                                                                                  >  2:382314/1‑151                                                                                                                                                                                                             GCCCACGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGGGCGTGCCCATGGTCAGCCTGGGCGAGGCGCTCAAGACCGTGCAGGACATCGCTCGCGAAGAGGCCCCGGAAGGCTTTGCCTTCGACTACGCCGGCGCGGCCCGCCAGTATGTACAGGAAGGCAGCGCATTGTGGGTCACCTTCGGCCTGGCGCTGGCGATCATTTTCCTCGTACTGGCTGCACA  >  1:366803/1‑235                                                                                                                                                                                                               caACGCCAGCTCAACCAGTTCCAGCAACTCAACGCTGCGATCATTCAGGGCGTGCCCATGGTCAGCCTGGGCGAGGCGCTCAAGACCGTGCAGGACATCGCTCGCGAAGAGGCCCCGGAAGGCTTTGCCTTCGACTACGCCGGCGCGGCCCGCCAGTATGTACAGGAAGGCAGCGCATTGTGGGTCACCTTCGGCCTG                                     <  1:374832/196‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                         CACTGTCACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1045744‑1045952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcccaCGCCAGCTCAACCAGTTCCAGCAACTGAACGCTGCGATCATTCAGGGCGTGCCCATGGTCAGCCTGGGCGAGGCGCTCAAGACCGTGCAGGACATCGCTCGCGAAGAGGCCCCGGAAGGCTTTGCCTTCGACTACGCCGGCGCGGCCCGCCAGTATGTACAGGAAGGCAGCGCATTGTGGGTCACCTTCGGCCTGGCGCTGGCGATCATTTTCCTCGTACTGGCTGCACA  <  AE015451/1046016‑1045787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.