New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1045952	10 (0.390)	5 (0.200)	5/302	NT	29.9%	coding (2426/3045 nt)	PP_0906	putative Multidrug efflux RND transporter
	?	AE015451	= 1046016	14 (0.570)					coding (2362/3045 nt)	PP_0906	putative Multidrug efflux RND transporter

ACAGATGGACAACGGCACTGTCACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATT  >  AE015451/1045729‑1046182                                                                                                                                                                                                                                |                                                                                                                                                                                                                                       acaGATGGACAACGGCACTGTCACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATgg                                                                                                                                                                                                                            <  1:483876/236‑1 (MQ=255)                cACTGTCACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGCTCTTGAGCGCCTCGCCCAGGCTGa                                                                                                                                                                                                                                  >  1:296844/1‑215 (MQ=255)                                    aCGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTg                                                                                                                                                                                          <  1:187782/235‑1 (MQ=255)                                                           tgtgCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggc                                                                                                                                                                   >  1:366803‑M2/1‑230 (MQ=255)                                                                        cGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGAAGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTg                                                                                                                                                     <  1:488750/236‑1 (MQ=255)                                                                                              cagGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTGAGTTGCTGGAACTGGTTGAGCTGGCGttg                                                                                                                                                                     <  1:374832‑M2/198‑4 (MQ=255)                                                                                                                   tacgcTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGa                                                                                                                                    <  1:365685/208‑1 (MQ=255)                                                                                                                        tGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTgg                                                                                                                                                                          >  1:25114/1‑167 (MQ=255)                                                                                                                        tGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCG‑AGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGttcttc                                                                                                     <  1:131229/235‑1 (MQ=255)                                                                                                                                       aCTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGc                                                                                                                   >  2:183807/1‑207 (MQ=255)                                                                                                                                          ggCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTc                                                                                      >  2:244164/1‑233 (MQ=255)                                                                                                                                          ggCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGGGAGGGTGATCAGGGTCGACCGCGGtg                                                                                                                            >  2:485720/1‑194 (MQ=255)                                                                                                                                              ggCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCC‑AGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaagaccgtgcaggaca                                                                                                                                          <  1:186826‑M2/176‑31 (MQ=255)                                                                                                                                              ggCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCC‑AGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaagaccgtgcaggaca                                                                                                                                          >  2:186822‑M2/1‑146 (MQ=255)                                                                                                                                                           tAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCGCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaag                                                                                                                                                       >  2:382314‑M2/1‑134 (MQ=255)                                                                                                                                                                                       ctTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAcgccagctcaaccagttccagcaactgaacgctgcgatcattcagggcgt                                                                                                                                                                                      <  2:58533‑M1/92‑51 (MQ=255)                                                                                                                                                                                       ctTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAcgccagctcaaccagttccagcaactgaacgctgcgatcattcagggcgt                                                                                                                                                                                      >  1:58536‑M1/1‑42 (MQ=255)                                                                                                                                                                                                   tGTCCTGCACGGTCTTGAGCGCCTCGCCCAcgccagctcaaccagttccagcaactgaacgctgcgatcattcagggcgtgcccatggtcagcctggcgaggcgctcaagaccgtgcaggacatcgctcgcgaagaggccccggaaggctttgccttcgactacgccggcgcggcc                                                                                      >  2:186822‑M1/1‑30 (MQ=255)                                                                                                                                                                                                   tGTCCTGCACGGTCTTGAGCGCCTCGCCCAcgccagctcaaccagttccagcaactgaacgctgcgatcattcagggcgtgcccatggtcagcctggcgaggcgctcaagaccgtgcaggacatcgctcgcgaagaggccccggaaggctttgccttcgactacgccggcgcggcc                                                                                      <  1:186826‑M1/176‑147 (MQ=255)                                                                                                                                                                                                                cTTGAGCGCCTCGCCCAcgccagctcaaccagttccagcaactgaacgctgcgatcattcagcgcgtgcccatggtcagcctgggcgaggcgctcaagaccgtgcaggacatcgctcgcgaagaggccccggaaggctttgccttcgacta                                                                                                  >  2:382314‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                            gCCCAcgccagctcaaccagttccagcaactgaacgctgcgatcattcagggcgtgcccatggtcagcctgggcgaggcgctcaagaccgtgcaggacatcgctcgcgaagaggccccggaaggctttgccttcgactacgccggcgcggcccgccagtatgtacaggaaggcagcgcattgtgggtcaccttcggcctggcgctggcgatcattttcctcgtactggctgcaca  >  1:366803‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                              caacgccagctcaaccagttccagcaactcaacgctgcgatcattcagggcgtgcccatggtcagcctgggcgaggcgctcaagaccgtgcaggacatcgctcgcgaagaggccccggaaggctttgccttcgactacgccggcgcggcccgccagtatgtacaggaaggcagcgcattgtgggtcaccttcggcctg                                     <  1:374832‑M1/196‑196 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                       ACAGATGGACAACGGCACTGTCACCAGAATCACCAACGGGTCGCGGAAGCTTTCGAACTGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATT  >  AE015451/1045729‑1046182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.