New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1045952	10 (0.390)	5 (0.200)	5/302	NT	29.9%	coding (2426/3045 nt)	PP_0906	putative Multidrug efflux RND transporter
	?	AE015451	= 1046016	14 (0.570)					coding (2362/3045 nt)	PP_0906	putative Multidrug efflux RND transporter

TGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTTCCGCCTCGCCCAGCAGGGTCGCCAAGGTGCCGCCGAGGGTGTCCATCGACACCCCCATCTGCGCCGC  >  AE015451/1045787‑1046250                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                           tgtgCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggc                                                                                                                                                                                                                                       >  1:366803‑M2/1‑230 (MQ=255)              cGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGAAGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTg                                                                                                                                                                                                                         <  1:488750/236‑1 (MQ=255)                                    cagGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTGAGTTGCTGGAACTGGTTGAGCTGGCGttg                                                                                                                                                                                                                                         <  1:374832‑M2/198‑4 (MQ=255)                                                         tacgcTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGa                                                                                                                                                                                                        <  1:365685/208‑1 (MQ=255)                                                              tGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCG‑AGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGttcttc                                                                                                                                                                         <  1:131229/235‑1 (MQ=255)                                                                             aCTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGc                                                                                                                                                                                       >  2:183807/1‑207 (MQ=255)                                                                                ggCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTc                                                                                                                                                          >  2:244164/1‑233 (MQ=255)                                                                                ggCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGGGAGGGTGATCAGGGTCGACCGCGGtg                                                                                                                                                                                                >  2:485720/1‑194 (MQ=255)                                                                                    ggCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCC‑AGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaagaccgtgcaggaca                                                                                                                                                                                                              <  1:186826‑M2/176‑31 (MQ=255)                                                                                    ggCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCC‑AGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaagaccgtgcaggaca                                                                                                                                                                                                              >  2:186822‑M2/1‑146 (MQ=255)                                                                                                 tAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCGCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaag                                                                                                                                                                                                                           >  2:382314‑M2/1‑134 (MQ=255)                                                                                                                                                                                     aCGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaagaccgtgcaggacatcgctcgcgaag                                                                                                                                                                                                  >  1:58536‑M2/1‑50 (MQ=255)                                                                                                                                                                                     aCGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGtgggcgaggcgctcaagaccgtgcaggacatcgctcgcgaag                                                                                                                                                                                                  <  2:58533‑M2/92‑43 (MQ=255)                                                                                                                                                                                     aCGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCt                                                                                           >  2:516984/1‑195 (MQ=255)                                                                                                                                                                                                      aGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTTCCGCCTCGCCCAGCAGGGTCGCCAAGGTGCCGCCGa                                 >  1:475183/1‑236 (MQ=255)                                                                                                                                                                                                           tCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTTCCGCCTCGCCCAGCAGGGTCGCCAAGGTGCCGCCGAGGgtg                            <  1:229865/236‑1 (MQ=255)                                                                                                                                                                                                                 gCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCa                                                                                                                         <  1:93545/137‑1 (MQ=255)                                                                                                                                                                                                                   tGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGaaa                                                                               >  2:340154/1‑177 (MQ=255)                                                                                                                                                                                                                              gAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTTCCGcc                                                                <  2:481232/181‑1 (MQ=255)                                                                                                                                                                                                                              gAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGGTGTcgcg                                                                                                                                      >  2:93541/1‑111 (MQ=255)                                                                                                                                                                                                                               aGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTGCCGCCTCGCCCAGCAGGGTCGCCACGGTGCCGCCGAGGGTCTcc                         >  1:497914/1‑219 (MQ=255)                                                                                                                                                                                                                                  tGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTTCCGCCTCg                                                             >  1:97210/1‑180 (MQ=255)                                                                                                                                                                                                                                      gTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTTCCGCCTCGCCCAGCAGGGTCGCCAAGGTGCCGCCGAGGGTGTCCATCGACACCCCCATCTGcgccgc  >  1:416200/1‑235 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                           TGTGCAGCCAGTACGAGGAAAATGATCGCCAGCGCCAGGCCGAAGGTGACCCACAATGCGCTGCCTTCCTGTACATACTGGCGGGCCGCGCCGGCGTAGTCGAAGGCAAAGCCTTCCGGGGCCTCTTCGCGAGCGATGTCCTGCACGGTCTTGAGCGCCTCGCCCAGGCTGACCATGGGCACGCCCTGAATGATCGCAGCGTTCAGTTGCTGGAACTGGTTGAGCTGGCGTGGGCGAGCGCGGTCGGTGAGGGTGATCAGGGTCGACAGCGGTAGCAACTGGCCCTGGTCGTTCTTCACGTAGTAGTTGTTCAGCCAGCCGGGGTTGTCGCGGTAAGGCCGTTCAACCTGGGCGATCACCTTGTAACTGCGGCCTTCAAGGGTGAAACGGTTGATTTCCGCCTCGCCCAGCAGGGTCGCCAAGGTGCCGCCGAGGGTGTCCATCGACACCCCCATCTGCGCCGC  >  AE015451/1045787‑1046250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.