New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1428994 =	29 (1.130)	3 (0.120)	3/302	NT	10.6%	coding (1095/1584 nt)	mqo‑II	malate:quinone oxidoreductase
	?	AE015451	1429099 =	23 (0.940)					coding (1200/1584 nt)	mqo‑II	malate:quinone oxidoreductase

ATCGGCGCAGCGGTCGAAGCACCCGGCGATGCACCCAGCAGGCCCGCGATGGTGCGGTCTTCGGACGCCACCACTTCAGTGCCCAGCTTCAGCACGCCGCCCTTCTCGGCATCACGTTTGATGATTTGCACGCGCTGGCCGGCCTGCCACAGGCGCCATTCTTCTTTCTTGGCGTTCGGGAAGTAGGTGCGCAGGGCTTCGAAGCGGTCATCGTCAGACAGCATCAGCTGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1429230‑1428994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagcgCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGCTACGGCACCAAGCT  >  AE015451/1429099‑1429329                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCGGCGCAGCGGTCGAAGCACCCGGCGATGCACCCAGCAGGCCCGCGATGGTGCGGTCTTCGGACGCCACCACTTCAGTGCCCAGCTTCAGCACGCCGCCCTTCTCGGCATCACGTTTGATGATTTGCACGCGCTGGCCGGCCTGCCACAGGCGCCATTCTTCTTTCTTGGCGTTCGGGAAGTAGGTGCGCAGGGCTTCGAAGCGGTCATCGTCAGACAGCATCAGCTGGCCA                                                                                                                                                                                                                                            <  1:499249/234‑1                      CCCGGCGATGCACCCAGCAGGCCCGCGATGGTGCGGTCTTCGGACGCCACCACTTCAGTGCCCAGCTTCAGCACGCCGCCCTTCTCGGCATCACGTTTAATGATTTGCACGCGCTGGCCGGCCTGCCACAGGCGCCATTCTTCTTTCTTGGCGTTCGGGAAGTAGGTGCGCAGGGCTTCGAAGCGGTCATCGTCAGACAGCATCAGCTGGC                                                                                                                                                                                                                                              <  2:386808/211‑1                                CACCCAGCAGGCCCGCGATGGTGCGGTCTTCGGACGCCACCACTTCAGTGCCCAGCTTCAGCACGCCGCCCTTCTCGGCATCACGTTTGATGATTTGCACGCGCTGGCCGGCCTGCCACAGGCGCCATTCTTCTTTCTTGGCGTTCGGGAAGTAGGTGCGCAGGGCTTCGAAGCGGTCATCGTCAGACAGCATCAGCTGGCCAGCGCGTGCAAATCATCAAACGTGAT                                                                                                                                                                                                                   <  1:335928/228‑1                                                                                                                                                         GCGCCATTCTTCTTTCTTGGCGTTCGGGAAGTAGGTGCGCAGGGCTTCGAAGCGGTCATCGTCAGACAGCATCAGCTGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGG                                                                                                                                                                                                        <  2:299187/118‑1                                                                                                                                                                               TTCGGGAAGTAGGTGCGCAGGGCTTCGAAGCGGGCATCGTCAGACAGCATCAGCTGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCT                                                                                                                                                                                         <  2:106077/111‑1                                                                                                                                                                                                                                     cgaCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGC                >  1:244230/4‑226                                                                                                                                                                                                                                          AGCGCGTGCAAATCATCAGACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGCTACGGCACCAAGCT  <  1:426131/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCGGCGCAGCGGTCGAAGCACCCGGCGATGCACCCAGCAGGCCCGCGATGGTGCGGTCTTCGGACGCCACCACTTCAGTGCCCAGCTTCAGCACGCCGCCCTTCTCGGCATCACGTTTGATGATTTGCACGCGCTGGCCGGCCTGCCACAGGCGCCATTCTTCTTTCTTGGCGTTCGGGAAGTAGGTGCGCAGGGCTTCGAAGCGGTCATCGTCAGACAGCATCAGCTGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1429230‑1428994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagcgCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGCTACGGCACCAAGCT  >  AE015451/1429099‑1429329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.