New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1428994 =	29 (1.130)	3 (0.120)	3/302	NT	10.6%	coding (1095/1584 nt)	mqo‑II	malate:quinone oxidoreductase
	?	AE015451	1429099 =	23 (0.940)					coding (1200/1584 nt)	mqo‑II	malate:quinone oxidoreductase

GCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGCTACGGCACCAAGCT  >  AE015451/1428869‑1429329                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                       gCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTg                                                                                                                                                                                                                                     <  2:216315/234‑1 (MQ=255)                    tCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGGGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCaa                                                                                                                                                                                                                          <  1:107569/226‑1 (MQ=255)                         cacccagcaggcccgcgatggtgcggtcttcggacgccaccacttcagtgcccagcttcagcacgccgcccttctcggcatcacgtttgatgatttgcacgcgctggccggcctgccacaggcgccattcttctttcttggcgttcgggaagtaggtgcgcagggcttcgaagcggtcatcgtcagacagcatcagctggccagcgCGTGCAAATCATCAAACGTGAt                                                                                                                                                                                                                   <  1:335928‑M2/22‑1 (MQ=255)                                                   gAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACt                                                                                                                                                                                  >  1:225352/1‑235 (MQ=255)                                                            caccaccCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAgtggtg                                                                                                                                                                         >  1:345611/1‑235 (MQ=255)                                                            caccaccCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGtggtgg                                                                                                                                                                        <  1:426955/236‑1 (MQ=255)                                                                                     aCCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCGAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAACCGTGATGCCGAGAAGGGCGGCGTGCTGGAGCTGGGCACTGAAGTGGTGGCGTc                                                                                                                                                                    >  1:66302/1‑215 (MQ=255)                                                                                                        atcacgtttgatgatttgcacgCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTg                                                                                                                                    <  1:335928‑M1/206‑1 (MQ=255)                                                                                                             ccACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAgtggt                                                                                                                                                                          >  1:350565/1‑185 (MQ=255)                                                                                                                      gAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACg                                                                                                                                                                                                                       >  1:116158/1‑131 (MQ=255)                                                                                                                       aGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCGGGGGGCATCGCCGGGTGc                                                                                                                       >  1:78393/1‑226 (MQ=255)                                                                                                                       aGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGGGGTGGCGTCCGAAGACCGCACCATCGCGGGCctgcg                                                                                                                                         >  2:292755/1‑207 (MQ=255)                                                                                                                       aGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTAATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCa                                                                                                                                                                                    >  1:327171/1‑165 (MQ=255)                                                                                                                                 TGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGAt                                                                                                     <  1:499249‑M1/234‑1 (MQ=255)                                                                                                                                   GCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATTAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCggg                                                                                                                          <  2:386808‑M1/211‑1 (MQ=255)                                                                                                                                               tGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCg                                                                                                                                                           <  2:183702/166‑1 (MQ=255)                                                                                                                                                  gcgccattcttctttcttggcgttcgggaagtaggtgcgcagggcttcgaagcggtcatcgtcagacagcatcagctggccagcgCGTGCAAATCATCAAACGTGATGCCGAGAAggg                                                                                                                                                                                                        <  2:299187‑M2/33‑1 (MQ=255)                                                                                                                                                   cgACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCct                                                                                                                                            <  1:385388/176‑1 (MQ=255)                                                                                                                                                    gACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGGGCATCGCCGGGTGCTTCGACCGCTGCGCCGAt                                                                                                     >  1:54171/1‑215 (MQ=255)                                                                                                                                                              gCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCGGTGGCAGGCCGGGCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGc                                                                                                                       >  2:426127/1‑187 (MQ=255)                                                                                                                                                                  cGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGGCCGAAGAcg                                                                                                                                                            >  2:195808/1‑145 (MQ=255)                                                                                                                                                                  cGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGGGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGGGCATCGCCGGGCGCTGCGa                                                                                                                  >  1:49057/1‑188 (MQ=255)                                                                                                                                                                        ttcgggaagtaggtgcgcagggcttcgaagcgggcatcgtcagacagcatcagctggccagcgCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCt                                                                                                                                                                                         <  2:106077‑M2/48‑1 (MQ=255)                                                                                                                                                                             gcACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTg                                                                                                                        >  1:336007/1‑171 (MQ=255)                                                                                                                                                                                    cTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAgg                                                               <  2:345607/221‑1 (MQ=255)                                                                                                                                                                                              gCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCgg                                                                                                                                                >  1:140512/1‑130 (MQ=255)                                                                                                                                                                                               ccAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGcc                                        <  2:350561/233‑1 (MQ=255)                                                                                                                                                                                                  agaaagaaGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAg                                           <  2:129959/227‑1 (MQ=255)                                                                                                                                                                                                     aagaagAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATc                                                                                                                                                    <  1:369730/119‑1 (MQ=255)                                                                                                                                                                                                           aaTGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATc                         <  1:168025/236‑1 (MQ=255)                                                                                                                                                                                                                              cgaccagcgCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGc                >  1:244230‑M2/10‑226 (MQ=255)                                                                                                                                                                                                                                   agcgCGTGCAAATCATCAGACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGCTACGGCACCAAGCt  <  1:426131‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                       GCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGCTTCGACCGCTGCGCCGATCATGCTGCACGTGCTGGAAACGGTGTTCAAGGAGAAGGTCGCTACCCCAGAGTGGCAGGCCAAGATCAAGGAAATCGTGCCGAGCTACGGCACCAAGCT  >  AE015451/1428869‑1429329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.