New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1428994 =	29 (1.130)	3 (0.120)	3/302	NT	10.6%	coding (1095/1584 nt)	mqo‑II	malate:quinone oxidoreductase
	?	AE015451	1429099 =	23 (0.940)					coding (1200/1584 nt)	mqo‑II	malate:quinone oxidoreductase

GGCCAAGGCCTACGGTATCGCCTCGACCGGTGCGCCACCCATGTCGGTCCCGCACCTGGACACCCGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGC  >  AE015451/1428763‑1429212                                                                                                                                                                                                                                        |                                                                                                                                                                                                                           agcttggtgccgtagctcggcacgatttccttgatcttggcctgccactctggggtagcgaccttctccttgaacaccgtttccagcacgtgcagcatgatcggcgcagcggtcgaagcacccggcgatgcacccagcaggcccgcgatggtgcggtcttcggacgccaccacttcagtgcccagcttcagcacgccgcccttctcggcatcacgtctgatgatttgcacgCGCt                                                                                                                                                                                                                         <  1:426131‑M1/4‑1 (MQ=255)               gctcggcacgatttccttgatcttggcctgccactctggggtagcgaccttctccttgaacaccgtttccagcacgtgcagcatgatcggcgcagcggtcgaagcacccggcgatgcacccagcaggcccgcgatggtgcggtcttcggacgccaccacttcagtgcccagcttcagcacgccgcccttctcggcatcacgtttgatgatttgcacgCgctggtcg                                                                                                                                                                                                                    >  1:244230‑M1/218‑223 (MQ=255)                     ccTCGACCGGTGCGCCACCCATGTCGGTCCCGCACCTGGACACCCGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCCGCTGATGCTGt                                                                                                                                                                                                         >  1:493052/1‑231 (MQ=255)                      cTCGACCGGTGCGCCACCCATGTCGGTCCCGCACCTGGACACCCGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCt                                                                                                                                                                                                                 >  2:257362/1‑222 (MQ=255)                         gACCGGTGCGCCACCCATGTCGGTCCCGCACCTGGACACCCGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGAt                                                                                                                                                                                                 <  1:470878/235‑1 (MQ=255)                                              ggTCCCGCACCTGGACACCCGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTgcgc                                                                                                                                                                            <  1:257366/235‑1 (MQ=255)                                                      aCCTGGACACCCGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTc                                                                                                                                                                   >  1:129963/1‑236 (MQ=255)                                                               cccGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGcc                                                                                                                                                          >  1:216319/1‑236 (MQ=255)                                                                ccGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCa                                                                                                                                                         <  1:94362/236‑1 (MQ=255)                                                                                  gcgcGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCaagaa                                                                                                                                                     <  1:448097/222‑1 (MQ=255)                                                                                      gTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTgc                                                                                                                                                                              <  2:239095/193‑1 (MQ=255)                                                                                                          cGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTGCCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTGCCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTc                                                                                                                                                                   <  1:114924/184‑1 (MQ=255)                                                                                                           gCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTg                                                                                                                <  2:216315/234‑1 (MQ=255)                                                                                                           gCTACCCTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCCGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGc                                                                                                                                                                                                                          <  2:517550/128‑1 (MQ=255)                                                                                                             tACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAagaaga                                                                                                                                               <  2:164000/201‑1 (MQ=255)                                                                                                                              tCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGGGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCaa                                                                                                     <  1:107569/226‑1 (MQ=255)                                                                                                                                                             gAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCt                                                                                                                                      <  2:318112/162‑1 (MQ=255)                                                                                                                                                             gAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCt                                                                                                                                      >  1:318116/1‑162 (MQ=255)                                                                                                                                                             gAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACt                                                             >  1:225352/1‑235 (MQ=255)                                                                                                                                                                   caccaccacCCACAACGTGTGGCCGATGACCAGAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCt                                                                                                                                                                                          <  1:469499/104‑1 (MQ=255)                                                                                                                                                                   caccaccacCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCt                                                                                                                                                                                          >  2:469495/1‑104 (MQ=255)                                                                                                                                                                      caccaccCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAgtggtg                                                    >  1:345611/1‑235 (MQ=255)                                                                                                                                                                      caccaccCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGtggtgg                                                   <  1:426955/236‑1 (MQ=255)                                                                                                                                                                             cacaACGAGTGGCCGATGACCCAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTgg                                                                                                                                  <  2:433532/150‑1 (MQ=255)                                                                                                                                                                              acaACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCa                                                                                                                                >  2:352486/1‑151 (MQ=255)                                                                                                                                                                                        agcttcagcacgccgcccttctcggcatcacgtttgatgatttgcacgCGCTGGCCAGCTGATGCTGTCTGACGATGCCCGCTTCGAAGCCCTGCGCACCTACTTCCCGaa                                                                                                                                                              <  2:106077‑M1/63‑1 (MQ=255)                                                                                                                                                                                               aCCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCGAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAACCGTGATGCCGAGAAGGGCGGCGTGCTGGAGCTGGGCACTGAAGTGGTGGCGTc                                               >  1:66302/1‑215 (MQ=255)                                                                                                                                                                                                       cccttctcggcatcacgtttgatgatttgcacgCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGgcgc                                                                                                                                        <  2:299187‑M1/85‑1 (MQ=255)                                                                                                                                                                                                                  atcacgtttgatgatttgcacgCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTg               <  1:335928‑M1/206‑1 (MQ=255)                                                                                                                                                                                                                  aGTACCCACTGGTCGAGTACCTCGCTGGACAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCCCCTACTTCCCGCACGCCaa                                                                                                                                                        >  2:80061/1‑91 (MQ=255)                                                                                                                                                                                                                       ccACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAgtggt                                                     >  1:350565/1‑185 (MQ=255)                                                                                                                                                                                                                                gAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACg                                                                                                  >  1:116158/1‑131 (MQ=255)                                                                                                                                                                                                                                 aGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCGGGGGGCATCGCCGGGTGc  >  1:78393/1‑226 (MQ=255)                                                                                                                                                                                                                                 aGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGGGGTGGCGTCCGAAGACCGCACCATCGCGGGCctgcg                    >  2:292755/1‑207 (MQ=255)                                                                                                                                                                                                                                 aGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTAATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCa                                                               >  1:327171/1‑165 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                           GGCCAAGGCCTACGGTATCGCCTCGACCGGTGCGCCACCCATGTCGGTCCCGCACCTGGACACCCGTGTGCTGGACGGCAAGCGCGTCATCCTGTTTGGCCCGTTCGCTACCTTCTCGACCAAGTTCCTGAAGAACGGCTCGTACCTGGACCTGCTGAGCAGCACCACCACCCACAACGTGTGGCCGATGACCAAAGTCGGTATCGACCAGTACCCACTGGTCGAGTACCTCGCTGGCCAGCTGATGCTGTCTGACGATGACCGCTTCGAAGCCCTGCGCACCTACTTCCCGAACGCCAAGAAAGAAGAATGGCGCCTGTGGCAGGCCGGCCAGCGCGTGCAAATCATCAAACGTGATGCCGAGAAGGGCGGCGTGCTGAAGCTGGGCACTGAAGTGGTGGCGTCCGAAGACCGCACCATCGCGGGCCTGCTGGGTGCATCGCCGGGTGC  >  AE015451/1428763‑1429212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.