New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2509159 =	16 (0.620)	3 (0.120)	3/308	NT	14.5%	coding (855/885 nt)	copB‑I	copper resistance protein B
	?	AE015451	2509309 =	20 (0.800)					coding (705/885 nt)	copB‑I	copper resistance protein B

CCGCTGGATACTGGAGCCGACCCTGGAGGCCAACCTCTACGGGCGCAACGACGCCGGGCGCGAACAAGGTGCGGGGCTGGCCGACAGCGAGGTGGGCCTGCGCCTGCGCTACGAAATCACGCGCGGCTTCGCCCCCTACGTCGGGCTCAGTTTCAACCGCCTGCACGGCTCGCGTGCCAACCAGGCCCGAGAAGACGGCGAAGATCTGGGCCAGACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2509378‑2509159 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCTGGATGCCGAAGGCGGCCCAGGTTTGGCCACTGGCAG  >  AE015451/2509309‑2509520                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCGCTGGATACTGGAGCCGACCCTGGAGGCCAACCTCTACGGGCGCAACGACGCCGGGCGCGAACAAGGTGCGGGGCTGGCCGACAGCGAGGTGGGCCTGCGCCTGCGCTACGAAATCACGCGCGGCTTCGCCCCCTACGTCGGGCTCAGTTTCAACCGCCTGCACGGCTCGCGTGCCAACCAGGCCCGAGAAGACGGCGACGATCTGGGCCAGACCCGC                                                                                                                                                                                                                      >  1:496875/1‑220                                                                                                                                                                              GTGCCAACCAGGCCCGAGAAGACGGCGAAGATCTGGGCCAGACCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCT                                                                                                                     >  1:423966/1‑144                                                                                                                                                                              GTGCCAACCAGGCCCGAGAAGACGGCGAAGATCTGGGCCAGACCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCT                                                                                                                     <  2:423962/144‑1                                                                                                                                                                                                      GCGAAGATCTGGGCCAGACCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGATGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCCGGATGCCGAAGGCGGCCCAGGTTTGGCCACTGGCAG  >  1:230050/1‑235                                                                                                                                                                                                                          CGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTCGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCCTCCAGGCGCCGCGCCGTCTGTTGCCGC                                                                                          >  2:41428/1‑127                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCGCTGGATACTGGAGCCGACCCTGGAGGCCAACCTCTACGGGCGCAACGACGCCGGGCGCGAACAAGGTGCGGGGCTGGCCGACAGCGAGGTGGGCCTGCGCCTGCGCTACGAAATCACGCGCGGCTTCGCCCCCTACGTCGGGCTCAGTTTCAACCGCCTGCACGGCTCGCGTGCCAACCAGGCCCGAGAAGACGGCGAAGATCTGGGCCAGACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2509378‑2509159 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCTGGATGCCGAAGGCGGCCCAGGTTTGGCCACTGGCAG  >  AE015451/2509309‑2509520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.