New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2509159 =	16 (0.620)	3 (0.120)	3/308	NT	14.5%	coding (855/885 nt)	copB‑I	copper resistance protein B
	?	AE015451	2509309 =	20 (0.800)					coding (705/885 nt)	copB‑I	copper resistance protein B

CGCTCATGTTTGGCTCGACGTGGTCGTTGACGGTAAAACCATTGTCACGCAGGTGGCTGATCCAGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGG  >  AE015451/2508940‑2509378                                                                                                                                                                                                                            |                                                                                                                                                                                                                            cgcTCATGTTTGGCTCGACGTGGTCGTTGACGGTAAAACCATTGTCACGCAGGTGGCTGATCCAGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATAACGGCGACCAGGCGGGGCTGGccc                                                                                                                                                                                                                 >  1:109833/1‑232 (MQ=255)        gTTTGGCTCGACGTGGTCGTTGACGGTAAAACCATTGTCACGCAGGTGGCTGATCCAGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGc                                                                                                                                                                                                       <  1:223181/235‑1 (MQ=255)        ctgccagtggccaaacctgggccgccttcggcatccggggcacaccgctgtacggcctggagctgcaagccatcgcctatgcaggcgagcggcaacagacggcgctgcgcctggaagccgcttacgctatgctgctgaccaaccgctggatactggagccgaccctggaggccaacctctacgggcgcaacgacgccgggcgcgaacaaggtGCGGGTCTGGCCCAGATCTTCGc                                                                                                                                                                                                       >  1:230050‑M1/213‑235 (MQ=255)                     tGGTCGTTGACGGTAAAACCATTGTCACGCAGGTGGCTGATCCAGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCgg                                                                                                                                                                                            >  1:363931/1‑233 (MQ=255)                                      aCCATTGTCACGGAGGTGGCTGATCCAGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCAcgcg                                                                                                                                                                            <  2:183667/232‑1 (MQ=255)                                                           gATCCAGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCt                                                                                                                                                                                                                      >  2:184980/1‑169 (MQ=255)                                                                aGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGccc                                                                                                                                                >  1:476842/1‑234 (MQ=255)                                                                         agcagcCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAgggg                                                                                                                                      >  1:294504/1‑235 (MQ=255)                                                                                                gcggcaacagacggcgcggcgcctggaggccgcttacgctatgctgctgaccaaccgctggatactggagccgaccctggaggccgacctctacgggcgcaacgacgccgggcgcgaacaaggtGCg                                                                                                                                                                                                                           >  2:41428‑M1/125‑127 (MQ=255)                                                                                                                  gcggcCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAg                                                                                                              <  1:56716/218‑1 (MQ=255)                                                                                                                           agccgcttacgctatgctgctgaccaaccgctggatactggagccgaccctggaggccaacctctacgggcgcaacgacgccgggcgcgaacaaggtGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCAc                                                                                                                                                                               >  1:423966‑M1/98‑144 (MQ=255)                                                                                                                           agccgcttacgctatgctgctgaccaaccgctggatactggagccgaccctggaggccaacctctacgggcgcaacgacgccgggcgcgaacaaggtGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCAc                                                                                                                                                                               <  2:423962‑M1/47‑1 (MQ=255)                                                                                                                                                      aGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGag                                                                                                                     >  2:414871/1‑174 (MQ=255)                                                                                                                                                               agGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGTCGTAGGGGGCGGAGCCGCGCGTGCTTTCGTa                                                                                                               >  1:165672/1‑172 (MQ=255)                                                                                                                                                                                          tCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGt                     >  1:503007/1‑235 (MQ=255)                                                                                                                                                                                          tCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGGCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTTGGTGGCACGCGAGCCGt                                                                                                                                                                      >  1:87126/1‑90 (MQ=255)                                                                                                                                                                                               tAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAgcgcaggcg                                                                                                      >  2:395111/1‑149 (MQ=255)                                                                                                                                                                                                 aaaaCGCAGGCGGATAACGGCGTCGAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTg                                                                                                                                                                     <  2:187795/84‑1 (MQ=255)                                                                                                                                                                                                                aCCGGCGACCAGGCGGGTCGGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGcgtcg                                                  <  1:50984/184‑1 (MQ=255)                                                                                                                                                                                                                 ccGGCGACCCGGCGGGTCTGGCCAAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGGGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCcgtgcg                                                                                                                         <  2:226568/112‑1 (MQ=255)                                                                                                                                                                                                                            GCGGGTCTGGCCCAGATCGTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCgg  >  1:496875‑M1/1‑220 (MQ=255)                                                                                                                                                                                                                            |                                                                                                                                                                                                                            CGCTCATGTTTGGCTCGACGTGGTCGTTGACGGTAAAACCATTGTCACGCAGGTGGCTGATCCAGGCCTTGCAGCAGCCGCAGTTGGGGTCGCGGTAGACGTCGATGGTCTCGGCGGCCTGGGCCAGGCCGGTGACGGCCAGCAGGCTCAGGGTCAGCAGGTGTTTGCGCAGCATGGTGAAGCACTCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGG  >  AE015451/2508940‑2509378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.