New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2509159 =	16 (0.620)	3 (0.120)	3/308	NT	14.5%	coding (855/885 nt)	copB‑I	copper resistance protein B
	?	AE015451	2509309 =	20 (0.800)					coding (705/885 nt)	copB‑I	copper resistance protein B

TCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCTGGATGCCGAAGGCGGCCCAGGTTTGGCCACTGGCAG  >  AE015451/2509125‑2509520                                                                                                                                                                                         |                                                                                                                                                                                                                    tCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGt                                                                                                                                                                   >  1:503007/1‑235 (MQ=255)                       aCCGGCGACCAGGCGGGTCGGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGcgtcg                                                                                                                                                                                                <  1:50984/184‑1 (MQ=255)                                   GCGGGTCTGGCCCAGATCGTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCgg                                                                                                                                                >  1:496875‑M1/1‑220 (MQ=255)                                               cAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGt                                                                                                                                           <  1:229453/213‑1 (MQ=255)                                                    cTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAg                                                                                                                >  1:473232/1‑235 (MQ=255)                                                          cGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGt                                                                                                                                                                   <  2:436433/178‑1 (MQ=255)                                                          cGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGt                                                                                                                                                                   >  1:436437/1‑178 (MQ=255)                                                                                            cAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCCTAGGCg                                                                           >  2:437363/1‑232 (MQ=255)                                                                                                          tGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTc                                                                                        <  1:395115/205‑1 (MQ=255)                                                                                                              cccGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCt                                                                                         <  2:363927/200‑1 (MQ=255)                                                                                                                cGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTcagc                                                                                                                                       <  1:172593/152‑1 (MQ=255)                                                                                                                         gggCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGgtgt                                           >  1:204469/1‑235 (MQ=255)                                                                                                                               aGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGt                                                                                                >  2:463677/1‑176 (MQ=255)                                                                                                                               aGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGGTCGCGCCCGGCGGCGTTGCGCCCGtcg                                                                                                                                                                                    >  2:68971/1‑90 (MQ=255)                                                                                                                                          gtgccaaccaggcccgagaagacggcgaagatctgggccagacccgcACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCt                                                                                                                     >  1:423966‑M2/48‑144 (MQ=255)                                                                                                                                          gtgccaaccaggcccgagaagacggcgaagatctgggccagacccgcACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCt                                                                                                                     <  2:423962‑M2/97‑1 (MQ=255)                                                                                                                                          aTTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTgg                                                                                                                                            <  2:322658/121‑1 (MQ=255)                                                                                                                                            ttCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCTGGATGCCGAAggcg                        <  2:473228/235‑1 (MQ=255)                                                                                                                                               gTAGCGCAGGCGCAGGCCCACGTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGtt                                                                                                                                                                                              <  2:45152/66‑1 (MQ=255)                                                                                                                                                  gcgcaggcgcagGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTcc                                                            <  1:64498/193‑1 (MQ=255)                                                                                                                                                        gcgcaggcCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGgtg                                            <  2:204465/203‑1 (MQ=255)                                                                                                                                                                ccACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCTGGATGCCGAAGGCGGCCCAGGTTTGGCCACTGGCa   >  1:432202/1‑236 (MQ=255)                                                                                                                                                                  gcgaagatctgggccagacccgcACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGATGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCCGGATGCCGAAGGCGGCCCAGGTTTGGCCACTGGCAg  >  1:230050‑M2/24‑235 (MQ=255)                                                                                                                                                                              gCCAGCCCCGCACCCTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCa                                                                 <  1:154375/160‑1 (MQ=255)                                                                                                                                                                                cAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCAt                                                                                <  1:309538/143‑1 (MQ=255)                                                                                                                                                                                cAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCAt                                                                                >  2:309534/1‑143 (MQ=255)                                                                                                                                                                                      cgcACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTCGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCCTCCAGGCGCCGCGCCGTCTGTTGCCGc                                                                                          >  2:41428‑M2/4‑127 (MQ=255)                                                                                                                                                                                         |                                                                                                                                                                                                                    TCCTTTAAAAACGCAGGCGGATACCGGCGACCAGGCGGGTCTGGCCCAGATCTTCGCCGTCTTCTCGGGCCTGGTTGGCACGCGAGCCGTGCAGGCGGTTGAAACTGAGCCCGACGTAGGGGGCGAAGCCGCGCGTGATTTCGTAGCGCAGGCGCAGGCCCACCTCGCTGTCGGCCAGCCCCGCACCTTGTTCGCGCCCGGCGTCGTTGCGCCCGTAGAGGTTGGCCTCCAGGGTCGGCTCCAGTATCCAGCGGTTGGTCAGCAGCATAGCGTAAGCGGCTTCCAGGCGCAGCGCCGTCTGTTGCCGCTCGCCTGCATAGGCGGTGGCTTGCAGCTCCAGGCCGTACAGCGGTGTGCCCTGGATGCCGAAGGCGGCCCAGGTTTGGCCACTGGCAG  >  AE015451/2509125‑2509520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.