New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3052494	15 (0.580)	3 (0.120)	3/304	NT	15.7%	coding (1194/1899 nt)	PP_2664	putative hybrid sensor and regulator, histidine kinase
	?	AE015451	= 3052505	18 (0.730)					coding (1205/1899 nt)	PP_2664	putative hybrid sensor and regulator, histidine kinase

ACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3052343‑3052494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccagcACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGTTGCGCAGGATGCGTGCCAGCAGCTGGATGTCACTGCGCACGACGGCAGAACACCCCACAAAATGCAG  <  AE015451/3052505‑3052393                                                                                                                                                                                                                                                                           ACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAG                                                                                                                    >  1:249287/1‑151                                                                 GTGTCCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAAGGCTATCCGCTACACCCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGCTGC                                                                  <  2:226843/137‑1                                                                                                 TGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGTTGCGCAGGATGCGTGCCAGCAGCTGGATGTCACTGCGCACGACGGCAG                     >  2:214564/1‑150                                                                                                     GGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGTTGCGCAGGATGCGTGCCAGCAGCTGGATGTCACTGCGCACGACGGCAGAACACCCCACAAAATGCAG  <  1:214568/165‑1                                                                                                                                                                                                                                                                           ACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3052343‑3052494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccagcACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGTTGCGCAGGATGCGTGCCAGCAGCTGGATGTCACTGCGCACGACGGCAGAACACCCCACAAAATGCAG  <  AE015451/3052505‑3052393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.