New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3052494	15 (0.580)	3 (0.120)	3/304	NT	15.7%	coding (1194/1899 nt)	PP_2664	putative hybrid sensor and regulator, histidine kinase
	?	AE015451	= 3052505	18 (0.730)					coding (1205/1899 nt)	PP_2664	putative hybrid sensor and regulator, histidine kinase

GTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGG  >  AE015451/3052270‑3052727                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          gtggATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGgc                                                                                                                                                                                                                                       <  2:197303/229‑1 (MQ=255)                                                 ccGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCgg                                                                                                                                                                                                                   <  1:338300/201‑1 (MQ=255)                                                                          aCAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCgaaga                                                                                                                                                        >  1:242611/1‑235 (MQ=255)                                                                             tccTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGGGCTGCATGTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACGCCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGa                                                                                                                                                                                             <  1:37560/194‑1 (MQ=255)                                                                                tGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGTAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGt                                                                                                                                                                                                       <  1:453198/182‑1 (MQ=255)                                                                                            aCGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCAAAGAACACCTGCAAGACATGTTc                                                                                                                                     <  1:243505/236‑1 (MQ=255)                                                                                             cGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTc                                                                                                                                     <  1:231588/235‑1 (MQ=255)                                                                                              gTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCgaaga                                                                                                                                                        <  2:391235/215‑1 (MQ=255)                                                                                                                        agagCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAgc                                                                                                         <  1:282817/236‑1 (MQ=255)                                                                                                                            cTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTgctgggggtgtagcggatagcattgctgagcaggttgcgcaggatgcgtgcc                                                                                                                                                                            <  1:214568‑M2/165‑53 (MQ=255)                                                                                                                                          gtgtCCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAAGGCTATCCGCTACACCCCCAGCaccacgcgcccgctgggggtgtagcggatagcattgctgagcaggctgc                                                                                                                                                                                          <  2:226843‑M1/137‑50 (MQ=255)                                                                                                                                            gtTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTgg                                                                                      >  1:405962/1‑235 (MQ=255)                                                                                                                                               cTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTgctgggggtgtagcggatagcattgctgagcaggttgcgcaggatgcgtgccagca                                                                                                                                                                        >  2:214564‑M2/1‑94 (MQ=255)                                                                                                                                                       gtGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTgg                                                                           >  1:185683/1‑235 (MQ=255)                                                                                                                                                                    tCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATc                                                                >  2:280448/1‑233 (MQ=255)                                                                                                                                                                          tgctgGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCaccacgcgcccgctgggggtgtagcggatagcattgctgagcaggttgcgcaggatgcgtgccagcagctggatgtcactgcgcacgacggcag                                                                                                                                             >  2:214564‑M1/1‑56 (MQ=255)                                                                                                                                                                            ctgGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTg                                                                                       <  2:405958/202‑1 (MQ=255)                                                                                                                                                                              ggCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCaccacgcgcccgctgggggtgtagcggatagcattgctgagcaggttgcgcaggatgcgtgccagcagctggatgtcactgcgcacgacggcagaacaccccacaaaatgcag                                                                                                                          <  1:214568‑M1/165‑114 (MQ=255)                                                                                                                                                                                   gCAGCCGGCGCAACCTGCTCCGCAATGCTATCCGCTACACCCCCAGCCGgc                                                                                                                                                                                                                                       <  2:414112/51‑1 (MQ=255)                                                                                                                                                                                           cgcAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGgc                                                                                                                                                                                                                                       <  2:323912/43‑1 (MQ=255)                                                                                                                                                                                            gcAGCCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTgctgggggtgtagcggatagccttgctgagcaggttgcgcaggatgcgtgccagcagctggatgtcactgcgcacgacggcaggacac                                                                                                                                        <  2:226843‑M2/137‑89 (MQ=255)                                                                                                                                                                                                                 tCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAAt                                                                 >  2:121395/1‑187 (MQ=255)                                                                                                                                                                                                                         acCCCGAGCGGGGGCGTGGTGCTGGGGTTTCGGCGCCTGCTCGGTGGCGTGCGGATTGAAGTATGGTACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAg                                                                                                                                             <  2:449874/103‑1 (MQ=255)                                                                                                                                                                                                                         acCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGCGGCGTGCGGAt                                                                                                                                                                                            >  2:3437/1‑56 (MQ=255)                                                                                                                                                                                                                                gCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAgg  <  1:121399/235‑1 (MQ=255)                                                                                                                                                                                                                                 cGGGCGCGTGGTGCGGGGTGGGCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGAATCGGCAGTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAgc                                                                                                         <  2:86284/131‑1 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          GTGGATATTTCCAAACTCGATGCCGGGGTGATCAAGGCAGATGTCGCCCCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGG  >  AE015451/3052270‑3052727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.