New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 3052494 | 15 (0.580) | 3 (0.120) | 3/304 | NT | 15.7% | coding (1194/1899 nt) | PP_2664 | putative hybrid sensor and regulator, histidine kinase |
? | AE015451 | = 3052505 | 18 (0.730) | coding (1205/1899 nt) | PP_2664 | putative hybrid sensor and regulator, histidine kinase |
CCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGG > AE015451/3052318‑3052727 | ccGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCgg < 1:338300/201‑1 (MQ=255) aCAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCgaaga > 1:242611/1‑235 (MQ=255) tccTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGGGCTGCATGTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACGCCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGa < 1:37560/194‑1 (MQ=255) tGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGTAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGt < 1:453198/182‑1 (MQ=255) aCGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCAAAGAACACCTGCAAGACATGTTc < 1:243505/236‑1 (MQ=255) cGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTc < 1:231588/235‑1 (MQ=255) gTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCgaaga < 2:391235/215‑1 (MQ=255) agagCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAgc < 1:282817/236‑1 (MQ=255) cTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTgctgggggtgtagcggatagcattgctgagcaggttgcgcaggatgcgtgcc < 1:214568‑M2/165‑53 (MQ=255) gtTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTgg > 1:405962/1‑235 (MQ=255) cTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTgctgggggtgtagcggatagcattgctgagcaggttgcgcaggatgcgtgccagca > 2:214564‑M2/1‑94 (MQ=255) gtGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTgg > 1:185683/1‑235 (MQ=255) tCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATc > 2:280448/1‑233 (MQ=255) ctgGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTg < 2:405958/202‑1 (MQ=255) gcAGCCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTgctgggggtgtagcggatagccttgctgagcaggttgcgcaggatgcgtgccagcagctggatgtcactgcgcacgacggcaggacac < 2:226843‑M2/137‑89 (MQ=255) tCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAAt > 2:121395/1‑187 (MQ=255) acCCCGAGCGGGGGCGTGGTGCTGGGGTTTCGGCGCCTGCTCGGTGGCGTGCGGATTGAAGTATGGTACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAg < 2:449874/103‑1 (MQ=255) acCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGCGGCGTGCGGAt > 2:3437/1‑56 (MQ=255) gCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAgg < 1:121399/235‑1 (MQ=255) cGGGCGCGTGGTGCGGGGTGGGCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGAATCGGCAGTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAgc < 2:86284/131‑1 (MQ=255) ggCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGACTTCATGCGGGGTGATGTGCCGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCa > 2:471744/1‑199 (MQ=255) | CCGTTTGCCCTCCACGAACTGATGGACAACCTGGCTGCCGAATACGTCCAGGTGGCGCGTAGCGAAGGGTTAGAGCTGCATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGG > AE015451/3052318‑3052727 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |