New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3617570 =	32 (1.240)	3 (0.120)	3/304	NT	8.3%	coding (595/1170 nt)	PP_3188	conserved protein of unknown function
	?	AE015451	3617599 =	36 (1.460)					coding (624/1170 nt)	PP_3188	conserved protein of unknown function

CCATGTAGAGGCCCAGTTCACCTGTCGCGGCTTGCAGCTGCCGGTACAGCGCGCCCAACGTCTCGGGTAAGTCCTGTGTATCGGCCAGCAGCACCACGAACAGGTCGCCCGGCAACTGCGCCGTCACACTGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3617705‑3617570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgggCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGATGTGGCGCAGCATCTGCGCCCGGCCAACGGCTATTGCAACTTC  >  AE015451/3617599‑3617818                                                                                                                                                                                                                                                                                                                                                                      CCATGTAGAGGCCCAGTTCACCTGTCGCGGCTTGCAGCTGCCGGTACAGCGCGCCCAACGTCTCGGGTAAGTCCTGTGTATCGGCCAGCAGCACCACGAACAGGTCGCCCGGCAACTGCGCCGTCACACTGCCGGGCGACCTGTTC                                                                                                                                                                                                                    <  2:122049/146‑1         AGGCCCAGTTCACCTGTCGCGGCTTGCAGCTGCCGGTACAGCGCGCCCAACGTCTCGGGTAAGTCCTGTGTATCGGCCAGCAGCACCACGAACAGGTCGCCCGGCAACTGCGCCGTCACACTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGC                                                                                                                                                                       <  2:171918/183‑1              CAGTTCACCTGTCGCGGCTTGCAGCTGCCGGTACAGCGCGCCCAACGTCTCGGGTAAGTCCTGTGTATCGGCCAGCAGCACCACGAACAGGTCGCCCGGCAGCTGCGCCGTCACACTGCCG                                                                                                                                                                                                                                >  2:367031/1‑121                                                                 GGGTAAGTCCTGTGTATCGGCCAGCAGCACCACGAACAGGTCGCCCGGCAACTGCGCCGTCACACTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGG                                                                                                                                                                        <  2:333372/126‑1                                                                                                                                    CCGGGCGACCTGTTCGGGGGGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGATGTGGCGCAGCATCTGCGCCCGGCCAACGGCTATTGCAACTTC  <  2:193713/225‑1                                                                                                                                                                                                                                                                                                                                                                      CCATGTAGAGGCCCAGTTCACCTGTCGCGGCTTGCAGCTGCCGGTACAGCGCGCCCAACGTCTCGGGTAAGTCCTGTGTATCGGCCAGCAGCACCACGAACAGGTCGCCCGGCAACTGCGCCGTCACACTGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3617705‑3617570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgggCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGATGTGGCGCAGCATCTGCGCCCGGCCAACGGCTATTGCAACTTC  >  AE015451/3617599‑3617818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.