New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3617570 =	32 (1.240)	3 (0.120)	3/304	NT	8.3%	coding (595/1170 nt)	PP_3188	conserved protein of unknown function
	?	AE015451	3617599 =	36 (1.460)					coding (624/1170 nt)	PP_3188	conserved protein of unknown function

TGGCCAACTGCTCACAGGCGACTACCCGAGCCTGGCAATTGCCCGGCAACGGGCAGCACACCTGCAACTGGCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGATGTG  >  AE015451/3617350‑3617779                                                                                                                                                                                                                             |                                                                                                                                                                                                                  gaagttgcaatagccgttggccgggcgcagatgctgcgccacatccagcgcctggcgtgcctcgttgagggcctggcgatagtgcgcgcaatcgtcagcgaggctcgacaggcccatgtagaggcccagttcacctgtcgcggcttgcagctgccggtacagcgcgcccaacgtctcgggtaagtcctgtgtatcggccagcagccccccgaacaggtcgCCCgg                                                                                                                                                                                                               <  2:193713‑M1/5‑1 (MQ=255)                        aCCCGAGCCTGGCAATTGCCCGGCAACGGGCAGCACACCTGCAACTGGCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGtt                                                                                                                                                                              >  1:193717/1‑235 (MQ=255)                           cGAGCCTGGCAATTGCCCGGCAACGGGCAGCACACCTGCAACTGGCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCcccca                                                                                                                                                                                                                 >  2:515015/1‑196 (MQ=255)                                cTGGCAATTGCCCGGCAACGGGCAGCACACCTGCAACTGGCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGtgct                                                                                                                                                                     <  1:143269/236‑1 (MQ=255)                                           ccGGCAACGGGCAGCACACCTGCAACTGGCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGa                                                                                                                                                            >  2:488916/1‑234 (MQ=255)                                                                   aCTGGCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTgg                                                                                                                                  <  1:152052/236‑1 (MQ=255)                                                                      ggCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGt                                                                                                                                                                               >  2:447128/1‑188 (MQ=255)                                                                      ggCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGt                                                                                                                                                                               <  1:447132/188‑1 (MQ=255)                                                                           tGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCg                                                                                                                                                                            <  1:270775/186‑1 (MQ=255)                                                                           tGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCg                                                                                                                                                                            >  2:270771/1‑186 (MQ=255)                                                                              aTAAACCGCGGCGCCTGCTGGCGTTGCGCCTGCCGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGa                                                                                                                                                                                                       <  1:317731/156‑1 (MQ=255)                                                                                aaaCCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCg                                                                                                                                                                            >  2:136330/1‑181 (MQ=255)                                                                                aaaCCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCg                                                                                                                                                                            <  1:136334/181‑1 (MQ=255)                                                                                aaaCCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGgc                                                                                                                                <  1:408645/225‑1 (MQ=255)                                                                                            ctgctgGCGTTGCGCCGGACGGGGGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCg                                                                                                                                                                            <  1:32421/169‑1 (MQ=255)                                                                                                   cGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTgg                                                                                                                                                                <  2:195153/174‑1 (MQ=255)                                                                                                                            cTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATg                                                                             <  1:135402/232‑1 (MQ=255)                                                                                                                               gTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGa                                                                                                    >  2:304144/1‑206 (MQ=255)                                                                                                                                 tCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTgg                                                                                                                                                                <  2:464340/144‑1 (MQ=255)                                                                                                                                    aGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGgc                                                                                                                                <  2:173229/173‑1 (MQ=255)                                                                                                                                                  gcgcCCGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGtgct                                                                                                                                                                     <  1:63020/122‑1 (MQ=255)                                                                                                                                                  gcgcACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTg                                                   <  1:488920/236‑1 (MQ=255)                                                                                                                                                    gcACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTg                                                                                         <  2:427206/196‑1 (MQ=255)                                                                                                                                                         gCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTCCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGa                                                                                                    <  1:244762/180‑1 (MQ=255)                                                                                                                                                              cGTACCTGGCAGGCCCCCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGaa                                                                                            <  1:39933/183‑1 (MQ=255)                                                                                                                                                                     ggCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTg                                                                                         <  1:438694/179‑1 (MQ=255)                                                                                                                                                                     ggCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTg                                                                                         >  2:438690/1‑179 (MQ=255)                                                                                                                                                                      gcccaacgtctcgggtaagtcctgtgtatcggccagcagcaccacgaacaggtcgCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCct                                                                                    <  2:171918‑M1/128‑1 (MQ=255)                                                                                                                                                                       cccaacgtctcgggtaagtcctgtgtatcggccagcagcaccacgaacaggtcgCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTAccc                                                                                                                                            <  2:333372‑M1/72‑1 (MQ=255)                                                                                                                                                                              cccGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGAc                                                        >  1:61673/1‑203 (MQ=255)                                                                                                                                                                                        ccTGGAAGATCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTggg                                                                                       <  1:107604/162‑1 (MQ=255)                                                                                                                                                                                                     cTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGa      <  2:177898/230‑1 (MQ=255)                                                                                                                                                                                                     cTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGa      >  1:177902/1‑230 (MQ=255)                                                                                                                                                                                                              tGGTGCCGCCAGCGGCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTGCGTGGTGCTGCTGGCCGATACGCAg                                                                                                                                                     <  2:59897/78‑1 (MQ=255)                                                                                                                                                                                                                   gaacaggtcgCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATgg                                                                            <  2:122049‑M1/136‑1 (MQ=255)                                                                                                                                                                                                                     gccAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTc                                                              <  2:242805/158‑1 (MQ=255)                                                                                                                                                                                                                       cggcgcCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGGCGTGCCTCgtt                                                           <  1:73270/157‑3 (MQ=255)                                                                                                                                                                                                                       cAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGAtgtg  <  1:475664/216‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                  TGGCCAACTGCTCACAGGCGACTACCCGAGCCTGGCAATTGCCCGGCAACGGGCAGCACACCTGCAACTGGCGCTGGATAAACCGCGGCGCCTGCTGGCGTTGCGCCTGACGGGCGTGAACGCCTTGTTCGAGCGCCAAGGGCTGGCGCACGGCGAGCGTACCTGGCAAGCCACCCGCCAGGCCCTGGAAGACCAGCTCGAAGCCTGGTGCCGCCAGCGCCCCGGCAGTGTGACGGCGCAGTTGCCGGGCGACCTGTTCGTGGTGCTGCTGGCCGATACACAGGACTTACCCGAGACGTTGGGCGCGCTGTACCGGCAGCTGCAAGCCGCGACAGGTGAACTGGGCCTCTACATGGGCCTGTCGAGCCTCGCTGACGATTGCGCGCACTATCGCCAGGCCCTCAACGAGGCACGCCAGGCGCTGGATGTG  >  AE015451/3617350‑3617779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.