New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4338572 =	26 (1.010)	4 (0.160)	4/302	NT	12.0%	coding (244/294 nt)	PP_5632	enzyme subunit involved in allo‑isoleucine metabolism
	?	AE015451	4338688 =	34 (1.390)					coding (128/294 nt)	PP_5632	enzyme subunit involved in allo‑isoleucine metabolism

AGGCCTACTGGATAGCCCATGTGGACGTGACCGACCCCGAGCAATACCAGCAGTACACCCAGCGCGCCCCAGCTGCCTTCAAGGCATTCGGCGGTCGCTTCCTGGCCCGTGGCGGGCGTAGTGAGGCGATGGAAGGGAGGGCTACGCCTCAGCGTAGTGTGGTGATCGAGTTCGATTCGTACGCGCAGGCCGTCGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCAGCCATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4338811‑4338572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcgccTCACTACGCCCGCCACGGGCCAGGAAGCGACCGCCGAATGCCTTGAAGGCAGCTGGGGCGCGCTGGGTGTACTGCTGGTATTGCTCGGGGTCGGTCACGTCCACATGGGCTATCCAGTAGGCCTTCATGTGCAGCTCTCCTGTTACGATGATATTTGTGTATGATGGTATACCATAAAAT  >  AE015451/4338688‑4338867                                                                                                                                                                                                                                                                                                                                                                                                                                      AGGCCTACTGGATAGCCCATGTGGACGTGACCGACCCCGAGCAATACCAGCAGTACACCCAGCGCGCCCCAGCTGCCTTCAAGGCATTCGGCGGTCGCTTCCTGGCCCGTGGCGGGCGTAGTGAGGCGATGGAAGGGAGGGCTACGCCTCAGCGTAGTGTGGTGATCGAGTTCGATTCGTACGCGCAGGCCGTCGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCAGCCA                                                                                                                                                                                           <  1:175455/235‑1   GCCTACTGGATAGCCCATGTGGACGTGACCGACCCCGAGCAATACCAGCAGTACACCCAGCGCGCCCCAGCTGCCTTCAAGGCATTCGGCGGTCGCTTCCTGGCCCGTGGCGGGCGTAGTGAGGCGATGGAAGGGAGGGCTACGCCTCAGCGTAGTGTGGTGATCGAGTTCGATTCGTACGCGCAGGCCGTCGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCAGCCATCG                                                                                                                                                                                        <  1:174846/236‑1                                                                                                                                               TACGCCTCAGCGTAGTGTGGTGATCGAGTTCGATTCGTACGCGCAGGCCGTCGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCGGCCATCGCCccgg                                                                                                                                                                                  >  2:62532/1‑98                                                                                                                                                                     ATCGAGTTCGATTCGTACGCGCAGGCCGTCGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCAGCCATCGCCTCACTACGCCCGCCACGGGCCAGGAAGCGACCGCCGAATGCCTTGAAGGCAGCTGGGGCGCGCTGG                                                                                                                    >  1:71841/1‑142                                                                                                                                                                               ATTCGTACGCGCAGGCCGTCGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCAGCCATCGCCTCACTACGCCCGCCACGGGCCAGGAAGCGACCGCCGAATGCCTTGAAGGCAGCTGGGGCGCGCTGGGTGTACTGCTGGTATTGCTCGGGGTCGGTCACGTCCACATGGGCTATCCAGTAGGCCTTCATGTGCAGCTCTCCTGTTACGATGATATTTGTGTATGATGGTAT            >  1:461282/1‑236                                                                                                                                                                                          aagagacagGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCAGCCATCGCCTCACTACGCCCGCCACGGGCCAGGAAGCGACCGCCGAATGCCTTGAAGGCAGCTGGGGCGCGCTGGGTGTACTGCTGGTATTGCTCGGGGTCGGTCACGTCCACATGGGCTATCCAGTAGGCCTTCATGTGCAGCTCTCCTGTTACGATGATATTTGTGTATGATGGTATACCATAAAAT  <  1:429339/226‑1                                                                                                                                                                                                                 CGCGCTGTACCAAGAGGCATGCAGCCATCGCCTCACTACGCCCGCCACGGGCCAGGAAGCGACCGCCGAATGCCTTGAAGGCAGCTGGGGCGCGCTGGGTGTACTGCTGGTATTGCTCGGGGTCGGTCACGTCCACATGGGCTATCCAGTAGGCCTTCATGTGCAGCTCTCCTGTTACGATGATATTT                          >  2:429335/1‑188                                                                                                                                                                                                                                                                                                                                                                                                                                      AGGCCTACTGGATAGCCCATGTGGACGTGACCGACCCCGAGCAATACCAGCAGTACACCCAGCGCGCCCCAGCTGCCTTCAAGGCATTCGGCGGTCGCTTCCTGGCCCGTGGCGGGCGTAGTGAGGCGATGGAAGGGAGGGCTACGCCTCAGCGTAGTGTGGTGATCGAGTTCGATTCGTACGCGCAGGCCGTCGCCTGTTACCGCTCCGCGCTGTACCAAGAGGCATGCAGCCATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4338811‑4338572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcgccTCACTACGCCCGCCACGGGCCAGGAAGCGACCGCCGAATGCCTTGAAGGCAGCTGGGGCGCGCTGGGTGTACTGCTGGTATTGCTCGGGGTCGGTCACGTCCACATGGGCTATCCAGTAGGCCTTCATGTGCAGCTCTCCTGTTACGATGATATTTGTGTATGATGGTATACCATAAAAT  >  AE015451/4338688‑4338867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.