New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4535670 =	24 (0.930)	3 (0.120)	3/302	NT	13.1%	intergenic (+197/‑618)	PP_4022/PP_4024	conserved protein of unknown function/transposase
	?	AE015451	4535721 =	17 (0.690)					intergenic (+248/‑567)	PP_4022/PP_4024	conserved protein of unknown function/transposase

CAGCATCTTGTTCAGCCATTCGGCTGGCATGTAGTGGGCGATGACGGCGCCGAGCGACGCCCCGGTCAGGGTGGCGAACAATGCCGGGCGCCACTGCGCCGGATGGAACAGTTTGCGTTTGTAGTAGGTGAAACCTGCAGTGGCCGAGCCGAAGGTGGAACTGAGCTTGTTGGTGCCCAGTACCAGGTGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4535908‑4535670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgcACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGATGCTGCCAGTGATCGTCTTCGCCTGTGGCATCTACCTGTTGTTCGG  >  AE015451/4535721‑4535949                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAGCATCTTGTTCAGCCATTCGGCTGGCATGTAGTGGGCGATGACGGCGCCGAGCGACGCCCCGGTCAGGGTGGCGAACAATGCCGGGCGCCACTGCGCCGGATGGAACAGTTTGCGTTTGTAGTAGGTGAAACCTGCAGTGGCCGAGCCGAAGGTGGAACTGAGCTTGTTGGTGCCCAGTACCAGGTGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGC                                                                                                                                                                                                                                             <  2:418158/233‑1                                                                                                               GTTTGCGTTTGTAGTAGGTGAACCCTGCAGTGGCCGAGCCGCAGGTGGAACTGAGCTTGTTGGTGCCCAGTACCAGGTGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCAC                                                                                                                                                                                      <  2:280542/178‑1                                                                                                                                          CAGTGGCCGAGCCGAAGGTGGAACTGGGCTTGTTGGTGCCCAGTACCAGGTGCGGCGGCATGCCGGCAGTGGGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCA                                                                                                                                                                                       <  2:207422/150‑1                                                                                                                                                   gGCCGAAGGTGGAACTGAGCTTGTTGGTGCCCAGTACCAGGTGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGCACCTGGT                                                                                                                                                                                                                                <  2:475547/99‑1                                                                                                                                                                                                                                         CCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAACCGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACA                                                   <  1:72686/187‑1                                                                                                                                                                                                                                          CGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGATGCTGCCAGTGATCGTCTTCGCCTGTGGCATCTACCTGTTGTTCGG  <  1:309906/235‑1                                                                                                                                                                                                                                            CCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGGACAGGATGCTGCCA                                        >  2:435826/1‑195                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAGCATCTTGTTCAGCCATTCGGCTGGCATGTAGTGGGCGATGACGGCGCCGAGCGACGCCCCGGTCAGGGTGGCGAACAATGCCGGGCGCCACTGCGCCGGATGGAACAGTTTGCGTTTGTAGTAGGTGAAACCTGCAGTGGCCGAGCCGAAGGTGGAACTGAGCTTGTTGGTGCCCAGTACCAGGTGCGGCGGCATGCCGGCAGTGAGCAGGGCCGGAGTGGTGAGCAGGCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4535908‑4535670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgcACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGATGCTGCCAGTGATCGTCTTCGCCTGTGGCATCTACCTGTTGTTCGG  >  AE015451/4535721‑4535949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.