New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4535670 =	24 (0.930)	3 (0.120)	3/302	NT	13.1%	intergenic (+197/‑618)	PP_4022/PP_4024	conserved protein of unknown function/transposase
	?	AE015451	4535721 =	17 (0.690)					intergenic (+248/‑567)	PP_4022/PP_4024	conserved protein of unknown function/transposase

AACAAATTAACCAGAACGCAAAAGGGAAACTGAAGCACGCAATCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGT  >  AE015451/4535441‑4535852                                                                                                                                                                                                                                      |                                                                                                                                                                                       ccgaacaacaggtagatgccacaggcgaagacgatcactggcagcatcttgttcagccattcggctggcatgtagtgggcgatgacggcgccgagcgacgccccggtcagggtggcgaacaatgccgggcgccactgcgccggatggaacagtttgcgtttgtagtaggtgaaacctgcagtggccgagccgaaggtggaactgagcttgttggtgcccagtaccaggtgcggcg                                                                                                                                                                                   <  1:309906‑M1/6‑1 (MQ=255)       ttAACCAGAACGCAAAAGGGAAACTGAAGCACGCAATCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCt                                                                                                                                                                            <  1:263580/236‑1 (MQ=255)                    aaaaGGGAAACTGAAGCACGCAATCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCt                                                                                                                                                                            <  2:368221/223‑1 (MQ=255)                       aGGGAAACTGAAGCACGCAATCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTcacca                                                                                                                                                                       <  2:314437/225‑1 (MQ=255)                                  aGCACGCAATCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACt                                                                                                                                                                     <  1:432681/216‑1 (MQ=255)                                       tggcagcatcctgtccagccattcggctggcatgtagtgggcgatgacggcgccgagcgacgccccggtcagggtggcgaacaatgccgggcgccactgcgccggatggaacagtttgcgtttgtagtaggtgaaacctgcagtggccgagccgaaggtggaactgagcttgttggtgcccagtaccaggtgcgg                                                                                                                                                                                     >  2:435826‑M1/192‑195 (MQ=255)                                           tCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTggcggcg                                                                                                                                                                                   <  1:328520/193‑1 (MQ=255)                                           tCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTggcggcg                                                                                                                                                                                   >  2:328516/1‑193 (MQ=255)                                                  tgttcagccattcggctggcatgtagtgggcgatgacggcgccgagcgacgccccggtcagggtggcgaacaatgccgggcgccactgcgccggatggaacagtttgcggttgtagtaggtgaaacctgcagtggccgagccgaaggtggaactgagcttgttggtgcccagtaccaggtGcggcgg                                                                                                                                                                                  <  1:72686‑M1/7‑1 (MQ=255)                                                      ggACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGt                                                                                                                               <  2:349345/234‑1 (MQ=255)                                                                         ttGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTAACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTTGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTggctgcgg                                                                                                                                                                                  >  2:201684/1‑164 (MQ=255)                                                                         ctGATGGTATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATgcc                                                                                                                                           <  1:237441/202‑1 (MQ=255)                                                                           gATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGCTGGCGGCGGCCTGc                                                                                                                                                                             >  2:74032/1‑167 (MQ=255)                                                                                                                 agcCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATgcc                                                                                                                                           <  1:517748/162‑1 (MQ=255)                                                                                                                         aaCTGCCTGAAGCCTCCCAGGCTCTTCGAACTCACCGTAGAACCCCTGACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATGCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGccc                                                                                                                                                              <  2:35590/136‑1 (MQ=255)                                                                                                                                    gCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCa                                                                                      <  2:124332/197‑1 (MQ=255)                                                                                                                                           aTGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGgcg                                          >  1:345829/1‑234 (MQ=255)                                                                                                                                                   cGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCCCCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGgcg                                          >  1:16538/1‑226 (MQ=255)                                                                                                                                                                  aCCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCa                 >  1:385084/1‑236 (MQ=255)                                                                                                                                                                         aCCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGt                       <  1:514464/223‑1 (MQ=255)                                                                                                                                                                         aCCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGt                       >  2:514460/1‑223 (MQ=255)                                                                                                                                                                                tcATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGc                   >  2:388011/1‑220 (MQ=255)                                                                                                                                                                                  aaccTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCTCTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTtcggctc                                                                                           >  2:287662/3‑146 (MQ=255)                                                                                                                                                                                  aTCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTg                                                                                                                                                            <  1:62495/81‑1 (MQ=255)                                                                                                                                                                                  aTCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTg                                                                                                                                                            >  2:62492/1‑81 (MQ=255)                                                                                                                                                                                  aTCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGt  >  1:329833/1‑235 (MQ=255)                                                                                                                                                                                     gtggccgagccgaaggtggaactgagcttgttggtgcccagtaccaggtGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTGCGGCTCGGCCACTGCAGGGTTCACCTACTACAAACGCAAAc                                                        <  2:280542‑M1/129‑1 (MQ=255)                                                                                                                                                                                     cTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCg   >  1:11506/1‑231 (MQ=255)                                                                                                                                                                                      tggccgagccgaaggtggaactgagcttgttggtgcccagtaccaggtGCGGCGGCCTGCTCACCACTCCGGCCCTGCCCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCCCAGTTCCACCTTCGGCTCGGCCACTg                                                                                   <  2:207422‑M1/102‑1 (MQ=255)                                                                                                                                                                                                                               accaggtGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCttcggcc                                                                                            <  2:475547‑M1/93‑2 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                       AACAAATTAACCAGAACGCAAAAGGGAAACTGAAGCACGCAATCGGGCATATCGGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGT  >  AE015451/4535441‑4535852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.