New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4535670 =	24 (0.930)	3 (0.120)	3/302	NT	13.1%	intergenic (+197/‑618)	PP_4022/PP_4024	conserved protein of unknown function/transposase
	?	AE015451	4535721 =	17 (0.690)					intergenic (+248/‑567)	PP_4022/PP_4024	conserved protein of unknown function/transposase

GGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGATGCTGCCAGTGATCGTCTTCGCCTGTGGCATCTACCTGTTGTTCGG  >  AE015451/4535494‑4535949                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                     ggACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGt                                                                                                                                                                                                                                <  2:349345/234‑1 (MQ=255)                                                                               gCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCa                                                                                                                                                                                       <  2:124332/197‑1 (MQ=255)                                                                                      aTGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGgcg                                                                                                                                           >  1:345829/1‑234 (MQ=255)                                                                                              cGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCCCCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGgcg                                                                                                                                           >  1:16538/1‑226 (MQ=255)                                                                                                   gtttgcgtttgtagtaggtgaaccctgcagtggccgagccgcaggtggaactgagcttgttggtgcccagtaccaggtgcggcggcatgccggcagtgagcagggccggagtggtgagcaggccgccgcACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCAc                                                                                                                                                                                      <  2:280542‑M2/49‑1 (MQ=255)                                                                                                             aCCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCa                                                                                                                  >  1:385084/1‑236 (MQ=255)                                                                                                                    aCCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGt                                                                                                                        >  2:514460/1‑223 (MQ=255)                                                                                                                    aCCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGt                                                                                                                        <  1:514464/223‑1 (MQ=255)                                                                                                                           tcATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGc                                                                                                                    >  2:388011/1‑220 (MQ=255)                                                                                                                             aaccTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCTCTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTtcggctc                                                                                                                                                                                            >  2:287662/3‑146 (MQ=255)                                                                                                                             aTCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGt                                                                                                   >  1:329833/1‑235 (MQ=255)                                                                                                                              cagtggccgagccgaaggtggaactgggcttgttggtgcccagtaccaggtgcggcggcatgccggcagtgggcagggccggagtggtgagcaggccgccgcACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCa                                                                                                                                                                                       <  2:207422‑M2/48‑1 (MQ=255)                                                                                                                                gtggccgagccgaaggtggaactgagcttgttggtgcccagtaccaggtGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTGCGGCTCGGCCACTGCAGGGTTCACCTACTACAAACGCAAAc                                                                                                                                                         <  2:280542‑M1/129‑1 (MQ=255)                                                                                                                                cTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCg                                                                                                    >  1:11506/1‑231 (MQ=255)                                                                                                                                 tggccgagccgaaggtggaactgagcttgttggtgcccagtaccaggtGCGGCGGCCTGCTCACCACTCCGGCCCTGCCCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCCCAGTTCCACCTTCGGCTCGGCCACTg                                                                                                                                                                                    <  2:207422‑M1/102‑1 (MQ=255)                                                                                                                                       ggccgaaggtggaactgagcttgttggtgcccagtaccaggtgcggcggcatgccggcagtgagcagggccggagtggtgagcaggccgccgcACCTGGt                                                                                                                                                                                                                                <  2:475547‑M2/7‑1 (MQ=255)                                                                                                                                                                          accaggtGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCttcggcc                                                                                                                                                                                             <  2:475547‑M1/93‑2 (MQ=255)                                                                                                                                                                                       GCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGAtgctg                                           <  2:418158‑M1/233‑1 (MQ=255)                                                                                                                                                                                                 cacTCCGGCCCGGCTCACGGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGATCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGc                                                                                                                             <  2:5914/141‑1 (MQ=255)                                                                                                                                                                                                    tCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTgg                                                                                                                                                                                                                                 >  2:109366/1‑38 (MQ=255)                                                                                                                                                                                                     ccGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGcc                                                                                                                   >  2:261056/1‑147 (MQ=255)                                                                                                                                                                                                                 aCTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCg                                                                                                 >  2:346587/1‑153 (MQ=255)                                                                                                                                                                                                                 aCTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGcc                                                                               >  2:329929/1‑171 (MQ=255)                                                                                                                                                                                                                  cTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGATGCTGCCAGTGATCGTCTTCGc                          <  1:201620/223‑1 (MQ=255)                                                                                                                                                                                                                             ccgccgcACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAACCGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACa                                                   <  1:72686‑M2/180‑1 (MQ=255)                                                                                                                                                                                                                              cgccgcACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGATGCTGCCAGTGATCGTCTTCGCCTGTGGCATCTACCTGTTGTTcgg  <  1:309906‑M2/229‑1 (MQ=255)                                                                                                                                                                                                                                ccgcACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGGACAGGATGCTGCCa                                        >  2:435826‑M2/5‑195 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                     GGACACTGACAGTGGCTGCTTGATGGCATTACCATAGCCGCTAACTGTAGCGTTTGTGCTGCCGACCAACTGCCTGAAGCCTCCCATGCCCTTCGAACTCACCGTAGAACCCCTTACCCTCCTCATCCTGGCGCTGGTCGCCTTCGTCGCTGGATTCATCGACGCCATCGCCGGTGGCGGCGGCCTGCTCACCACTCCGGCCCTGCTCACTGCCGGCATGCCGCCGCACCTGGTACTGGGCACCAACAAGCTCAGTTCCACCTTCGGCTCGGCCACTGCAGGTTTCACCTACTACAAACGCAAACTGTTCCATCCGGCGCAGTGGCGCCCGGCATTGTTCGCCACCCTGACCGGGGCGTCGCTCGGCGCCGTCATCGCCCACTACATGCCAGCCGAATGGCTGAACAAGATGCTGCCAGTGATCGTCTTCGCCTGTGGCATCTACCTGTTGTTCGG  >  AE015451/4535494‑4535949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.