New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5232679	21 (0.810)	3 (0.130)	3/282	NT	14.4%	coding (17/1578 nt)	PP_4610	conserved protein of unknown function containing PepSY‑associated TM helix domain
	?	AE015451	= 5232661	17 (0.740)					coding (35/1578 nt)	PP_4610	conserved protein of unknown function containing PepSY‑associated TM helix domain

CCCGTTCGTTCGGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5232443‑5232679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggccatggcctggcTGCACACCTGGACCGGCCTGATCTTCGGCTGGCTGTTGTTCGCCATCTTCCTTACCGGCACGCTGTCGTACTTCAAGGAAGAAATCACTCATTGGTCGCAACCTGAAGTGCGCAGCCATGCCCTGGACCCGATCAATAGCCTGGCGGTCGCTCAACGTTAC  <  AE015451/5232661‑5232501                                                                                                                                                                                                                                                                                                                                                                                                                CCCGTTCGTTCGGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTG                                                                                                                                                                     >  1:428624/1‑235         TTCGGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAG                                                                                                                                                                                <  2:507679/216‑1                                                                                GCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCTGCACACCTGGACCGGCCTGATCTTCGGCTGGCTGTTGTTC                                                                                                                          <  1:194757/199‑1                                                                                                                                                                      TAAGGAAGATGGCGAACACCAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCTGCACACCTGGACCGGCCTGATCTTCGGCTGGCTGTTGTTCGCCATCTTCCTTACCGGCACGCTGTCGTACTTCAAGGAAGAAATCACTCATTG                                                                     <  1:516945/166‑1                                                                                                                                                                                   GAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCTGCACACCTGGACCGGCCTGATCTTCGGCTGGCTGTTGTTCGCCATCTTCCTTACTGGCACGCTGTCGTACTTCAAGGAAGAAAGCACTCA                                                                        >  2:179521/1‑150                                                                                                                                                                                                                                           GGCTGCACACCCGGACCGGCCTGATCTTCGGCTGGCTGTTGTTCGCCATCCTCCTTACCGGCACGCTGTCGTACTTCAAGGAAGAAATCACTCATTGGTCGCAACCTGAAGTGCGCAGCCATGCCCTGGACCCGATCAATAGCCTGGCGGTCGCTCAACGTTAC  <  2:73469/164‑1                                                                                                                                                                                                                                                                                                                                                                                                                CCCGTTCGTTCGGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5232443‑5232679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggccatggcctggcTGCACACCTGGACCGGCCTGATCTTCGGCTGGCTGTTGTTCGCCATCTTCCTTACCGGCACGCTGTCGTACTTCAAGGAAGAAATCACTCATTGGTCGCAACCTGAAGTGCGCAGCCATGCCCTGGACCCGATCAATAGCCTGGCGGTCGCTCAACGTTAC  <  AE015451/5232661‑5232501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.