New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 5232679 | 21 (0.810) | 3 (0.130) | 3/282 | NT | 14.4% | coding (17/1578 nt) | PP_4610 | conserved protein of unknown function containing PepSY‑associated TM helix domain |
? | AE015451 | = 5232661 | 17 (0.740) | coding (35/1578 nt) | PP_4610 | conserved protein of unknown function containing PepSY‑associated TM helix domain |
GAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCAAGGCAATAC > AE015451/5232478‑5232888 | gAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCct > 1:372309/1‑210 (MQ=255) tGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAAcgcc > 1:338193/1‑236 (MQ=255) aTTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCctt > 1:327951/1‑200 (MQ=255) gACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCcagcagc > 2:294104/1‑228 (MQ=255) ccGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGgcg > 1:244997/1‑236 (MQ=255) gCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCtgcacacctggaccggcctgatcttcggctggctgttgttc < 1:194757‑M1/199‑42 (MQ=255) agcGGGTCCAGGGAATGGATGCGCACTTCAGGTTGCGACCAAGGAGTGATTTCTGCCTTGAAGTACGACAGCGGGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGa < 2:104653/152‑1 (MQ=255) cTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGgcg > 2:505602/1‑204 (MQ=255) tGCGCACTTCAGGTTGCGACCAATGAGTGATTTGTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAACATCAGGCCGGTCCAGGAGTGCAGCCAGGCCATGGCCCGGCGGAAg > 2:56310/1‑137 (MQ=255) tGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCtt > 1:54845/1‑199 (MQ=255) gCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAac < 2:428620/233‑1 (MQ=255) tGATTTCTTCCTTGAAGTACGACCGCGTGCCGGTAAGGAAGATGGCGAACAACCGCCAGCCGAAGATCAGGCCGGTTCAGGTGTGCAGCCAGGCCCTGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAAt < 1:42147/181‑1 (MQ=255) cAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGAca > 1:427309/1‑235 (MQ=255) gCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTa > 1:48139/1‑215 (MQ=255) tAAGGAAGATGGCGAACACCAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCtgcacacctggaccggcctgatcttcggctggctgttgttcgccatcttccttaccggcacgctgtcgtacttcaaggaagaaatcactcattg < 1:516945‑M1/166‑95 (MQ=255) cGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCCGCAGGGAGCAGACGAACGAcagcagc > 1:64942/1‑217 (MQ=255) cGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTgg < 2:244993/233‑1 (MQ=255) gAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCtgcacacctggaccggcctgatcttcggctggctgttgttcgccatcttccttactggcacgctgtcgtacttcaaggaagaaagcactca > 2:179521‑M1/1‑59 (MQ=255) gCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGAcagcagc < 2:305333/192‑1 (MQ=255) gCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCa < 1:294108/235‑1 (MQ=255) cgggTGTGCAGCCAGGCCATGGCCCGGCGGAAGCCTTCTTTCAGGCGTTTTTCCTCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGc < 1:73472/225‑1 (MQ=255) aGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCAAGGCAATAc > 1:323287/1‑236 (MQ=255) ccAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGgcgc > 2:123846/1‑212 (MQ=255) ccATGGCCTGGCGGAAGCCTTCTTTCATGCGTTGTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACTCCCAACCAGGCACGCCAGGCGCTGcggccggc > 2:139563/1‑123 (MQ=255) cATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGAcagc > 2:377884/1‑165 (MQ=255) cATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGAcagc < 1:377888/165‑1 (MQ=255) ggCtgcacacccggaccggcctgatcttcggctggctgttgttcgccatcctccttaccggcacgctgtcgtacttcaaggaagaaatcactcattggtcgcaacctgaagtgcgcagccatgccctggacccgatcaatagcctggcggtcgctcaacgttac < 2:73469‑M1/164‑162 (MQ=255) | GAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCAAGGCAATAC > AE015451/5232478‑5232888 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |