New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5232679	21 (0.810)	3 (0.130)	3/282	NT	14.4%	coding (17/1578 nt)	PP_4610	conserved protein of unknown function containing PepSY‑associated TM helix domain
	?	AE015451	= 5232661	17 (0.740)					coding (35/1578 nt)	PP_4610	conserved protein of unknown function containing PepSY‑associated TM helix domain

CCCGTTCGTTCGGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCAAGGCAATAC  >  AE015451/5232443‑5232888                                                                                                                                                                                                                           |                                                                                                                                                                                                                                    cccGTTCGTTCGGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTG                                                                                                                                                                                                                     >  1:428624‑M1/1‑235 (MQ=255)         ttcgGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAG                                                                                                                                                                                                                                <  2:507679‑M1/216‑1 (MQ=255)             gCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCa                                                                                                                                                                                                                                     >  2:194753/1‑207 (MQ=255)                                    gAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCct                                                                                                                                                                                                           >  1:372309/1‑210 (MQ=255)                                            tGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAAcgcc                                                                                                                                                                         >  1:338193/1‑236 (MQ=255)                                               aTTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCctt                                                                                                                                                                                                          >  1:327951/1‑200 (MQ=255)                                                           gTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAGGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCGGGTGTGCAgcc                                                                                                                                                                                                                                  <  2:73469‑M2/164‑4 (MQ=255)                                                                       gACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCcagcagc                                                                                                                                                      >  2:294104/1‑228 (MQ=255)                                                                         ccGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGgcg                                                                                                                                            >  1:244997/1‑236 (MQ=255)                                                                                gCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCtgcacacctggaccggcctgatcttcggctggctgttgttc                                                                                                                                                                          <  1:194757‑M1/199‑42 (MQ=255)                                                                                       agcGGGTCCAGGGAATGGATGCGCACTTCAGGTTGCGACCAAGGAGTGATTTCTGCCTTGAAGTACGACAGCGGGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGa                                                                                                                                                                                                                <  2:104653/152‑1 (MQ=255)                                                                                                         cTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGgcg                                                                                                                                            >  2:505602/1‑204 (MQ=255)                                                                                                          tGCGCACTTCAGGTTGCGACCAATGAGTGATTTGTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAACATCAGGCCGGTCCAGGAGTGCAGCCAGGCCATGGCCCGGCGGAAg                                                                                                                                                                                                              >  2:56310/1‑137 (MQ=255)                                                                                                          tGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCtt                                                                                                                                                >  1:54845/1‑199 (MQ=255)                                                                                                                         gCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAac                                                                                               <  2:428620/233‑1 (MQ=255)                                                                                                                              cAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAgccaggccatggcctggctgcacacctggaccggcctgatcttcggctggctggtgttcgccatcttcctta                                                                                                                                                             <  1:516945‑M2/166‑73 (MQ=255)                                                                                                                                 tGAGTGCTTTCTTCCTTGAAGTACGACAGCGTGCCAGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAgccaggccatggcctggctgcacacctggaccggcctgatcttcggctggctgttgttc                                                                                                                                                                          >  2:179521‑M2/1‑91 (MQ=255)                                                                                                                                     tGATTTCTTCCTTGAAGTACGACCGCGTGCCGGTAAGGAAGATGGCGAACAACCGCCAGCCGAAGATCAGGCCGGTTCAGGTGTGCAGCCAGGCCCTGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAAt                                                                                                                                       <  1:42147/181‑1 (MQ=255)                                                                                                                                                           cAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGAca                                                           >  1:427309/1‑235 (MQ=255)                                                                                                                                                                 gCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTa                                                                         >  1:48139/1‑215 (MQ=255)                                                                                                                                                                      tAAGGAAGATGGCGAACACCAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCtgcacacctggaccggcctgatcttcggctggctgttgttcgccatcttccttaccggcacgctgtcgtacttcaaggaagaaatcactcattg                                                                                                                     <  1:516945‑M1/166‑95 (MQ=255)                                                                                                                                                                                  cGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCCGCAGGGAGCAGACGAACGAcagcagc                                                      >  1:64942/1‑217 (MQ=255)                                                                                                                                                                                  cGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTgg                                      <  2:244993/233‑1 (MQ=255)                                                                                                                                                                                   gAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAgccaggccatggcctggctgcacacctggaccggcctgatcttcggctggctgttgttcgccatcttccttaccggcacgctgtcgtacttcaaggaagaaatcactcattggtcgcaacctgaagtgcgcagccatgccctggacccgatcaatagc                                                                       <  1:194757‑M2/199‑159 (MQ=255)                                                                                                                                                                                   gAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCtgcacacctggaccggcctgatcttcggctggctgttgttcgccatcttccttactggcacgctgtcgtacttcaaggaagaaagcactca                                                                                                                        >  2:179521‑M1/1‑59 (MQ=255)                                                                                                                                                                                                           gCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGAcagcagc                                                      <  2:305333/192‑1 (MQ=255)                                                                                                                                                                                                           gCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCa           <  1:294108/235‑1 (MQ=255)                                                                                                                                                                                                                  cgggTGTGCAGCCAGGCCATGGCCCGGCGGAAGCCTTCTTTCAGGCGTTTTTCCTCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGc            <  1:73472/225‑1 (MQ=255)                                                                                                                                                                                                                   aGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCAAGGCAATAc  >  1:323287/1‑236 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                    CCCGTTCGTTCGGCATGCGAATGAACCAGGTACTCGAATGCCCTGCATTGTCCTGCAGGTAACGTTGAGCGACCGCCAGGCTATTGATCGGGTCCAGGGCATGGCTGCGCACTTCAGGTTGCGACCAATGAGTGATTTCTTCCTTGAAGTACGACAGCGTGCCGGTAAGGAAGATGGCGAACAACAGCCAGCCGAAGATCAGGCCGGTCCAGGTGTGCAGCCAGGCCATGGCCTGGCGGAAGCCTTCTTTCATGCGTTTTTCATCCAGTAGGCAACGCCGCTGATCACGCCCAGCAGCAGGCTTGGCGCCAATACGCCCAACCAGGCACGCCAGGCGCTGCGGCAGGCGAAACACCAGATGAACGCCAGCAGGTAGAAGACGAACGACAGCAGCAGGCCGGTGAGCGTGGCATCGACCTTTGGCAACGGCGCCAGCAAGGCAATAC  >  AE015451/5232443‑5232888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.