New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5512576	28 (1.090)	3 (0.120)	3/304	NT	10.2%	coding (212/858 nt)	urtD	putative Urea ABC transporter, ATP‑binding protein
	?	AE015451	= 5512713	26 (1.060)					coding (349/858 nt)	urtD	putative Urea ABC transporter, ATP‑binding protein

TCGGCCTGTTGAAGAAAAGGAGCCAGCCATGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5512337‑5512576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcgaTCTGGTATTCGCTCATGCGGGTCAGGTCGAGGGTGTCGCCGAAGTAAGCCGT  <  AE015451/5512713‑5512662                                                                                                                                                                                                                                                                                                      TCGGCCTGTTGAAGAAAAGGAGCCAGCCATGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGG                                                          >  1:510090/1‑236         TTGAAGAAAAGGAGCCAGCCATGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGC                                                        <  1:408520/230‑1                        CAGCCATGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGATCTGGTATTCGCTCATGCG                                   <  1:331532/236‑1                              TGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGC                                                        >  1:218081/1‑209                                                     CCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGC                                                        >  1:502350/1‑186                                                                                                                                                                                        CAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGATCTGGTATTCGCTCATGCGGGTCAGGTCGAGGGTG                   <  1:256486/92‑1                                                                                                                                                                                        CAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGATCTGGTATTCGCTCATGCGGGTCAGGTCGAGGGTG                   >  2:256482/1‑92                                                                                                                                                                                                                                       GGGTGGGCGATCTGGTATTCGCTCATGCGGGTCAGGTCGAGGGTGTCGCCGAAGTAAGCCGT  <  1:451359/62‑1                                                                                                                                                                                                                                       GGGTGGGCGATCTGGTATTCGCTCATGCGGGTCAGGTCGAGGGTGTCGCCGAAGTAAGCCGT  >  2:451355/1‑62                                                                                                                                                                                                                                                                                                      TCGGCCTGTTGAAGAAAAGGAGCCAGCCATGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5512337‑5512576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcgaTCTGGTATTCGCTCATGCGGGTCAGGTCGAGGGTGTCGCCGAAGTAAGCCGT  <  AE015451/5512713‑5512662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.