New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5512576	28 (1.090)	3 (0.120)	3/304	NT	10.2%	coding (212/858 nt)	urtD	putative Urea ABC transporter, ATP‑binding protein
	?	AE015451	= 5512713	26 (1.060)					coding (349/858 nt)	urtD	putative Urea ABC transporter, ATP‑binding protein

AGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCA  >  AE015451/5512500‑5512930                                                                                                                                                                                                                      |                                                                                                                                                                                                                          aGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAgg                                                                                                                                                                                                                  >  1:252454/1‑223 (MQ=255)    cTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCCTGAGCGAATACCAGATCGCCCAGGCCGGCAtt                                                                                                                                                                                                          >  1:8421/1‑228 (MQ=255)    cTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCaa                                                                                                                                                                                                  >  1:480377/1‑236 (MQ=255)         aGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGCGCGAATACCAGATCGCCCAGGCCgg                                                                                                                                                                                                              >  1:11775/1‑219 (MQ=255)                aGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGcc                                                                                                                                                                                      <  1:340288/236‑1 (MQ=255)                 gCGTCAGCTTCGATGGTTTCAATGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGccc                                                                                                                                                                                     <  1:237400/236‑1 (MQ=255)                                gTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAgc                                                                                                                                                                       <  1:276552/235‑1 (MQ=255)                                      aGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGAcc                                                                                                                                                                >  1:279856/1‑236 (MQ=255)                                                                aTCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCt                                                                                                                                      >  1:437149/1‑236 (MQ=255)                                                                     ggTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGGTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGaa                                                                                                                                   >  2:430643/1‑234 (MQ=255)                                                                          gCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCt                                                                                                                                            >  2:368087/1‑220 (MQ=255)                                                                          gCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATAAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCgtgct                                                                                                                                                           >  1:438083/1‑203 (MQ=255)                                                                                                  ccAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGcc                                                                                                    <  1:368091/236‑1 (MQ=255)                                                                                                                          tgatgGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGc                                                                                                                                                                                       <  2:262955/129‑1 (MQ=255)                                                                                                                           gatgGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCcgcgc                                                                                                >  1:495053/1‑215 (MQ=255)                                                                                                                           gatgGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCCCGACCTGACCCGCATGACCGAATACCAGACCGCACAGGCCGGCATTGCCCGCAAGttt                                                                                                                                                                                              >  2:282209/1‑120 (MQ=255)                                                                                                                              ggACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGtt                                                                                                                                                                             <  2:279852/135‑1 (MQ=255)                                                                                                                                    aaTCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCACTGGCCGCAAGCTCCAGAAGCCCACAGTGGTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGgcgg                                                                                                                                       >  2:52135/1‑166 (MQ=255)                                                                                                                                             cAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTg                                                          >  1:122967/1‑235 (MQ=255)                                                                                                                                               aGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACg                                                            >  1:265360/1‑231 (MQ=255)                                                                                                                                                gACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAg                                                                                         <  1:201638/201‑1 (MQ=255)                                                                                                                                                    ccccccGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAg                                                                <  1:394560/220‑1 (MQ=255)                                                                                                                                                                   aCGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGAtcgcccaccc                                                                                                                                                                                                                 <  1:451359‑M2/62‑11 (MQ=255)                                                                                                                                                                   aCGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGAtcgcccaccc                                                                                                                                                                                                                 >  2:451355‑M2/1‑52 (MQ=255)                                                                                                                                                                    cGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCctgctg                                     <  2:480373/233‑1 (MQ=255)                                                                                                                                                                        ttACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTgg                              <  1:413271/236‑1 (MQ=255)                                                                                                                                                                           cTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGAccagcgccagct                                                                       <  2:510086/192‑2 (MQ=255)                                                                                                                                                                            ttCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAg                                                                <  1:266092/198‑1 (MQ=255)                                                                                                                                                                                    cacCCTCGACCTGACCCGCATGAGCGAATACCAGAtcgcccaccccgatgtacaggttcagcgtgttgagcgccttgaaaccatcgaagctg                                                                                                                                                                  >  2:256482‑M2/1‑35 (MQ=255)                                                                                                                                                                                    cacCCTCGACCTGACCCGCATGAGCGAATACCAGAtcgcccaccccgatgtacaggttcagcgtgttgagcgccttgaaaccatcgaagctg                                                                                                                                                                  <  1:256486‑M2/92‑58 (MQ=255)                                                                                                                                                                                          cGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGtt                                                                                                                                                                                               <  2:198267/57‑1 (MQ=255)                                                                                                                                                                                                    cGCATGAGCGAATACCAGAtcgcccaccccgatgtacaggttcagcgtgttgagcgccttgaaaccatcgaagctgacgctgatgtcttccaggctcagcaccgtaccgtggcgggtatccaggccggccttgcggctttggcccaggccgatggcatcgcgcccggcgccgaggttgtcgaataccggttccagcatgaactccgggtggactgggggcacgcctctcatggctg  <  1:331532‑M2/236‑218 (MQ=255)                                                                                                                                                                                                                      |                                                                                                                                                                                                                          AGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCA  >  AE015451/5512500‑5512930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.