New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5512576	28 (1.090)	3 (0.120)	3/304	NT	10.2%	coding (212/858 nt)	urtD	putative Urea ABC transporter, ATP‑binding protein
	?	AE015451	= 5512713	26 (1.060)					coding (349/858 nt)	urtD	putative Urea ABC transporter, ATP‑binding protein

GCCAGCCATGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAA  >  AE015451/5512358‑5512801                                                                                                                                                                                                                           |                                                                                                                                                                                                                                  gccagccaTGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAgctgcgctg                                                                                                                                                                                                                          >  1:207076/1‑228 (MQ=255)   cagccaTGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAtctggtattcgctcatgcg                                                                                                                                                                                                                <  1:331532‑M1/236‑20 (MQ=255)                  tGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGcc                                                                                                                                                                                                    >  2:467165/1‑233 (MQ=255)                  tGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGcc                                                                                                                                                                                                    <  1:467169/233‑1 (MQ=255)                                                                ccTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACga                                                                                                                                                                                       <  1:396255/200‑1 (MQ=255)                                                                    ggCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGCTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCg                                                                                                                                                <  1:504464/235‑1 (MQ=255)                                                                                             tGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTc                                                                                                                      <  1:331176/236‑1 (MQ=255)                                                                                                             ggccggccTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCa                                                                                                                                                                        >  1:99925/1‑170 (MQ=255)                                                                                                                          aCCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGccccc                                                                                                                                                      >  1:95483/1‑174 (MQ=255)                                                                                                                             cGCTACGGTACGGTGCTGAGCCTGGAAGACATCAGGGTCAGCTTCGATGGTTTCAAGGCGCGCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACgatg                                                                                                                                                                                     <  2:99921/141‑1 (MQ=255)                                                                                                                                    gtacggtGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTGAAGGCGCTCAACACGCTGAACCTGGACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCa                                                                                                                                                                        >  2:262637/1‑147 (MQ=255)                                                                                                                                             tGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGa                                                                                                  <  1:293824/208‑1 (MQ=255)                                                                                                                                             tGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGa                                                                                                  >  2:293820/1‑208 (MQ=255)                                                                                                                                               aGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAgg                                                                                 >  1:252454/1‑223 (MQ=255)                                                                                                                                                  cTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCCTGAGCGAATACCAGATCGCCCAGGCCGGCAtt                                                                         >  1:8421/1‑228 (MQ=255)                                                                                                                                                  cTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCaa                                                                 >  1:480377/1‑236 (MQ=255)                                                                                                                                                       aGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGCGCGAATACCAGATCGCCCAGGCCgg                                                                             >  1:11775/1‑219 (MQ=255)                                                                                                                                                       aGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGa                                                                                                  >  2:413267/1‑198 (MQ=255)                                                                                                                                                       aGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGAGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCg                                                                                                   >  2:237396/1‑197 (MQ=255)                                                                                                                                                          cATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGcc                                                                                                                                                                                                    <  2:154312/97‑1 (MQ=255)                                                                                                                                                              aGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGcc                                                     <  1:340288/236‑1 (MQ=255)                                                                                                                                                               gCGTCAGCTTCGATGGTTTCAATGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGccc                                                    <  1:237400/236‑1 (MQ=255)                                                                                                                                                                   cAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAtctggtattcgctcatgcgggtcaggtcgagggtg                                                                                                                                                                                                <  1:256486‑M1/92‑36 (MQ=255)                                                                                                                                                                   cAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAtctggtattcgctcatgcgggtcaggtcgagggtg                                                                                                                                                                                                >  2:256482‑M1/1‑57 (MQ=255)                                                                                                                                                                           aTGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTaa                                                                                                                                                                           <  1:72425/105‑1 (MQ=255)                                                                                                                                                                              gTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAgc                                      <  1:276552/235‑1 (MQ=255)                                                                                                                                                                                    aGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGAcc                               >  1:279856/1‑236 (MQ=255)                                                                                                                                                                                            aaCACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCg                                                                                                   >  1:420772/1‑160 (MQ=255)                                                                                                                                                                                            aaCACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCg                                                                                                   <  2:420768/160‑1 (MQ=255)                                                                                                                                                                                                              aTCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCt     >  1:437149/1‑236 (MQ=255)                                                                                                                                                                                                                  gggTGGGCGAtctggtattcgctcatgcgggtcaggtcgagggtgtcgccgaagtaagccgt                                                                                                                                                                               >  2:451355‑M1/1‑10 (MQ=255)                                                                                                                                                                                                                  gggTGGGCGAtctggtattcgctcatgcgggtcaggtcgagggtgtcgccgaagtaagccgt                                                                                                                                                                               <  1:451359‑M1/62‑53 (MQ=255)                                                                                                                                                                                                                   ggTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGGTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGaa  >  2:430643/1‑234 (MQ=255)                                                                                                                                                                                                                        gCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCt           >  2:368087/1‑220 (MQ=255)                                                                                                                                                                                                                        gCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATAAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCgtgct                          >  1:438083/1‑203 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                  GCCAGCCATGAGAGGCGTGCCCCCAGTCCACCCGGAGTTCATGCTGGAACCGGTATTCGACAACCTCGGCGCCGGGCGCGATGCCATCGGCCTGGGCCAAAGCCGCAAGGCCGGCCTGGATACCCGCCACGGTACGGTGCTGAGCCTGGAAGACATCAGCGTCAGCTTCGATGGTTTCAAGGCGCTCAACACGCTGAACCTGTACATCGGGGTGGGCGAGCTGCGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACGATGATGGACGTAATCACCGGCAAGACCCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAA  >  AE015451/5512358‑5512801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.