New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5559942	29 (1.130)	4 (0.170)	3/298	NT	12.9%	coding (555/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	AE015451	= 5559943	27 (1.120)					coding (554/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

GTCCGGGTAGCGCGACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5559717‑5559942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacagcAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGCTGATCGCCTGGC  <  AE015451/5559943‑5559733                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCCGGGTAGCGCGACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGAACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGT                                                                                                                                                                                                                             >  1:281509/1‑218                                                CCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCGTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCTTTGCGTCGAACA                                                                                                                                                                                                                       >  1:326627/1‑177                                                                                                                                                                           CGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCG                                                                                                                                                                      >  1:391084/1‑103                                                                                                                                                                           CGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCAGCTGTTC                                                                                                                                                                                                             >  1:4147/1‑64                                                                                                                                                                            GGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCAGCTGTTCGACTCCATGCCACGCAAGGCTGg                                                                                                                                                                                      >  2:153862/1‑85                                                                                                                                                                            GGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTC                                                                                                                                                                                                                            >  1:377062/1‑48                                                                                                                                                                                                               GTTGCATGGCGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCT                                                                    >  1:502452/1‑165                                                                                                                                                                                                                 ccggccagGTCGAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTTGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAACGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGC              <  1:99180/209‑1                                                                                                                                                                                                                            GAACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCc                       >  2:121380/1‑196                                                                                                                                                                                                                             AACAGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGCTGATCGCCTGGC  >  2:300216/1‑217                                                                                                                                                                                                                                AGCAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTG                                                                                                           >  2:406910/1‑109                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCCGGGTAGCGCGACGCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5559717‑5559942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacagcAGCTGTTCGACGCCATGCAACGCAAGGCTGTCGATGAAGTGCAGGCGCTGACGGCCGACCTGCCGAAAGACCTGGGCAGCATGCTGCGCGCCCTGGTCGAGCTGTGTGGTGGTCGGGAAGTACTGGCTGAAGCCCGCGTGCGCCTCGGTCGCGCCCCGGCCAGCGTGCTGGCGGCGCTGGATGACCTGCTGGCGATCGCTGATCGCCTGGC  <  AE015451/5559943‑5559733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.