New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5559942	29 (1.130)	4 (0.170)	3/298	NT	12.9%	coding (555/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	AE015451	= 5559943	27 (1.120)					coding (554/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

GCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCTGAGCG  >  AE015451/5559733‑5560161                                                                                                                                                                                                                   |                                                                                                                                                                                                                           gCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgtt                                                                                                                                                                                                                      >  2:300216‑M2/1‑211 (MQ=255)             gCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCGTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCAACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttcgacctggccgg                                                                                                                                                                                                          <  1:99180‑M2/217‑19 (MQ=255)                      ggcaggTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttc                                                                                                                                                                                                                     >  2:121380‑M2/2‑190 (MQ=255)                        cagGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGAcc                                                                                                                                                                                                                 <  2:160997/199‑1 (MQ=255)                                  aGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGcc                                                                                                                                                                     >  2:133987/1‑233 (MQ=255)                                            gCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACcg                                                                                                                                                                                                                >  2:217873/1‑180 (MQ=255)                                               cGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACcggcg                                                                                                                                                                                               <  2:352814/194‑1 (MQ=255)                                                    gCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCg                                                                                                                                                                    <  1:95323/216‑1 (MQ=255)                                                                   aGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttcgacgccatgcaac                                                                                                                                                                                                        >  1:502452‑M2/1‑145 (MQ=255)                                                                                     gCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGc                                                                                                               >  1:414332/1‑236 (MQ=255)                                                                                        aGTACTTCCCAACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAAGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCg                                                                                                                                                                                                           >  2:253291/1‑141 (MQ=255)                                                                                              tCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCa                                                                                                                            >  2:216723/1‑214 (MQ=255)                                                                                                  gACCACCACGCAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAg                                                                                                                                                                          <  2:374516/164‑1 (MQ=255)                                                                                                  gACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCt                                                                                                   >  1:386827/1‑235 (MQ=255)                                                                                                      accacACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAg                                                                                                                           >  1:345435/1‑207 (MQ=255)                                                                                                          cacaGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgct                                                                                                                                                                                                                         >  2:406910‑M2/1‑106 (MQ=255)                                                                                                           acaGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTc                                                                                          <  1:168749/235‑1 (MQ=255)                                                                                                                  gACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGc                                                                                                                                      <  1:151426/184‑1 (MQ=255)                                                                                                                  gACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTgg                                                                                                                >  1:19717/1‑206 (MQ=255)                                                                                                                  gACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGGTGCAGCGTGGCGAGCATCAgg                                                                                                     >  1:136975/1‑217 (MQ=255)                                                                                                                        ggCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACcggcg                                                                                                                                                                                               >  1:404461/1‑121 (MQ=255)                                                                                                                        ggCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACcggcg                                                                                                                                                                                               <  2:404457/121‑1 (MQ=255)                                                                                                                                   tgctgcCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCg                                                                 <  1:133991/236‑1 (MQ=255)                                                                                                                                     ctgcCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAg                                                                                                      >  2:440584/1‑197 (MQ=255)                                                                                                                                                      cAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCa                                                                                                                            <  1:166124/158‑1 (MQ=255)                                                                                                                                                              ccGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACa                                                          <  1:391128/216‑1 (MQ=255)                                                                                                                                                                     cgcCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccg                                                                                                                                                                    >  1:391084‑M2/1‑47 (MQ=255)                                                                                                                                                                           cACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTg                                                                                                                        >  2:391124/1‑141 (MQ=255)                                                                                                                                                                                     ccaGCCTTGCGTGGCATGGAGTCGAACAGCTgctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggcc                                                                                                                                                                     >  2:153862‑M2/2‑31 (MQ=255)                                                                                                                                                                                           ttGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTAccg                                                         >  2:477356/1‑186 (MQ=255)                                                                                                                                                                                           ttGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAACGTGGc                                                                                                               >  2:129463/1‑134 (MQ=255)                                                                                                                                                                                                 tGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCAtg                                                                                                                                                  <  2:293459/93‑1 (MQ=255)                                                                                                                                                                                                     tGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCTGAGCg  <  1:142374/233‑1 (MQ=255)                                                                                                                                                                                                      ggCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGACGCCGACagg                                                                                                                                                               >  2:66821/1‑73 (MQ=255)                                                                                                                                                                                                        cGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCg                                                     <  1:6613/179‑1 (MQ=255)                                                                                                                                                                                                           cGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCt       >  2:372420/1‑222 (MQ=255)                                                                                                                                                                                                            gAACAGCTgctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccg                                                                                                                                                                    >  1:4147‑M2/1‑8 (MQ=255)                                                                                                                                                                                                                aGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGc                                                                                                                    >  2:265722/1‑108 (MQ=255)                                                                                                                                                                                                                   |                                                                                                                                                                                                                           GCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCTGAGCG  >  AE015451/5559733‑5560161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.