New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 5559942 | 29 (1.130) | 4 (0.170) | 3/298 | NT | 12.9% | coding (555/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit |
? | AE015451 | = 5559943 | 27 (1.120) | coding (554/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit |
GCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCTGAGCG > AE015451/5559733‑5560161 | gCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgtt > 2:300216‑M2/1‑211 (MQ=255) gCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCGTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCAACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttcgacctggccgg < 1:99180‑M2/217‑19 (MQ=255) ggcaggTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttc > 2:121380‑M2/2‑190 (MQ=255) cagGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGAcc < 2:160997/199‑1 (MQ=255) aGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGcc > 2:133987/1‑233 (MQ=255) gCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACcg > 2:217873/1‑180 (MQ=255) cGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACcggcg < 2:352814/194‑1 (MQ=255) gCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCg < 1:95323/216‑1 (MQ=255) aGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttcgacgccatgcaac > 1:502452‑M2/1‑145 (MQ=255) gCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGc > 1:414332/1‑236 (MQ=255) aGTACTTCCCAACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAAGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCg > 2:253291/1‑141 (MQ=255) tCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCa > 2:216723/1‑214 (MQ=255) gACCACCACGCAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAg < 2:374516/164‑1 (MQ=255) gACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCt > 1:386827/1‑235 (MQ=255) accacACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAg > 1:345435/1‑207 (MQ=255) cacaGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgct > 2:406910‑M2/1‑106 (MQ=255) acaGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTc < 1:168749/235‑1 (MQ=255) gACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGc < 1:151426/184‑1 (MQ=255) gACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTgg > 1:19717/1‑206 (MQ=255) gACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGGTGCAGCGTGGCGAGCATCAgg > 1:136975/1‑217 (MQ=255) ggCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACcggcg < 2:404457/121‑1 (MQ=255) ggCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACcggcg > 1:404461/1‑121 (MQ=255) tgctgcCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCg < 1:133991/236‑1 (MQ=255) ctgcCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAg > 2:440584/1‑197 (MQ=255) cAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCa < 1:166124/158‑1 (MQ=255) cGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCagctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcg > 1:391084‑M1/1‑56 (MQ=255) cGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCagctgttc > 1:4147‑M1/1‑56 (MQ=255) ggCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCagctgttcgactccatgccacgcaaggctgg > 2:153862‑M1/1‑55 (MQ=255) ccGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACa < 1:391128/216‑1 (MQ=255) cgcCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTgctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccg > 1:391084‑M2/1‑47 (MQ=255) cACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTg > 2:391124/1‑141 (MQ=255) ccaGCCTTGCGTGGCATGGAGTCGAACAGCTgctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggcc > 2:153862‑M2/2‑31 (MQ=255) ttGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTAccg > 2:477356/1‑186 (MQ=255) ttGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAACGTGGc > 2:129463/1‑134 (MQ=255) gTTGCATGGCGTCGAACAGCagctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccgacctgccgaaagacctgggcagcatgctgcgcgccctggtcgagctgtgtggtggtcgggaagtactggctgaagcccgcgtgcgcct > 1:502452‑M1/1‑20 (MQ=255) tGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCAtg < 2:293459/93‑1 (MQ=255) ccggccaggtcgaacagCagctgttcgacgccatgcaacgcaaggctgttgatgaagtgcaggcgctgacggccgacctgccgaacgacctgggcagcatgctgcgcgccctggtcgagctgtgtggtggtcgggaagtactggctgaagcccgcgtgcgcctcggtcgcgccccggccagcgtgctggcggcgctggatgacctgctggcgatcgc < 1:99180‑M1/209‑200 (MQ=255) tGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCTGAGCg < 1:142374/233‑1 (MQ=255) ggCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGACGCCGACagg > 2:66821/1‑73 (MQ=255) cGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCg < 1:6613/179‑1 (MQ=255) cGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCt > 2:372420/1‑222 (MQ=255) gAACAGCagctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccgacctgccgaaagacctgggcagcatgctgcgcgccctggtcgagctgtgtggtggtcgggaagtactggctgaagcccgcgtgcgcctcggtcgcgccccggccagcgtgctggcggcgctggatgacctgcc > 2:121380‑M1/1‑7 (MQ=255) gAACAGCTgctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccg > 1:4147‑M2/1‑8 (MQ=255) aaCAGCagctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccgacctgccgaaagacctgggcagcatgctgcgcgccctggtcgagctgtgtggtggtcgggaagtactggctgaagcccgcgtgcgcctcggtcgcgccccggccagcgtgctggcggcgctggatgacctgctggcgatcgctgatcgcctggc > 2:300216‑M1/1‑6 (MQ=255) agcagctgttcgacgccatgcaacgcaaggctgtcgatgaagtgcaggcgctgacggccgacctgccgaaagacctgggcagcatgctgcgcgccctggtcgagctgtg > 2:406910‑M1/1‑3 (MQ=255) aGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGc > 2:265722/1‑108 (MQ=255) | GCCAGGCGATCAGCGATCGCCAGCAGGTCATCCAGCGCCGCCAGCACGCTGGCCGGGGCGCGACCGAGGCGCACGCGGGCTTCAGCCAGTACTTCCCGACCACCACACAGCTCGACCAGGGCGCGCAGCATGCTGCCCAGGTCTTTCGGCAGGTCGGCCGTCAGCGCCTGCACTTCATCGACAGCCTTGCGTTGCATGGCGTCGAACAGCTGCTGTTCGACCGCGCCGGACAGACCGGCGGCACGGGCCAGGCCGCGGTAGATGCCGACATGGCCCAGGTCCATGTGAACATCCGGCACATCGGCCAGTTGCAGCGTGGCGAGCATCAGGCTGATGACTTCGACATCGCTGGTAGGGCTGGCATCGCCGTACAGTTCGGCACCCAGCTGGATCGGGCTGCGCGAGGTGGACAAGGCACGTGGCTGAGCG > AE015451/5559733‑5560161 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |